Factsheet for GSMUA_Achr4P27870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P13560_001	Banana	cytosol	84.74	85.41
TraesCS3A01G302500.1	Wheat	cytosol	79.21	78.39
TraesCS3D01G299300.1	Wheat	cytosol	78.68	77.86
Zm00001d012676_P001	Maize	cytosol	78.16	77.75
Zm00001d043364_P001	Maize	mitochondrion	24.74	77.69
TraesCS3B01G333900.1	Wheat	cytosol	78.68	77.66
OQU89854	Sorghum	cytosol	77.37	76.56
EES03659	Sorghum	cytosol	77.37	76.56
HORVU3Hr1G073950.2	Barley	plastid	78.68	69.21
VIT_04s0023g01510.t01	Wine grape	cytosol	61.58	64.46
VIT_18s0001g12320.t01	Wine grape	cytosol	62.89	64.25
AT5G66740.1	Thale cress	cytosol	60.79	62.43
CDY53851	Canola	cytosol	60.26	62.06
Bra012096.1-P	Field mustard	cytosol	60.26	62.06
CDY30758	Canola	cytosol	60.26	62.06
CDY49838	Canola	cytosol	59.47	61.25
CDY52160	Canola	cytosol	59.21	60.98
Bra023074.1-P	Field mustard	plastid	54.47	60.88
KRH28651	Soybean	cytosol	58.42	58.73
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	57.63	58.71
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	57.37	58.45
KRH76791	Soybean	cytosol	57.11	58.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	57.63	57.78
PGSC0003DMT400036213	Potato	cytosol	38.42	57.48
CDY68684	Canola	cytosol, mitochondrion	42.63	56.64
KRH51867	Soybean	cytosol	56.32	56.02
KRH50361	Soybean	cytosol	56.32	56.02
CDX68146	Canola	cytosol	54.74	55.03
KRH05801	Soybean	cytosol	55.53	54.81
PGSC0003DMT400013218	Potato	cytosol	55.26	54.26
AT1G75160.1	Thale cress	cytosol	55.79	53.67
Solyc07g022840.1.1	Tomato	cytosol	52.63	53.62
Bra008179.1-P	Field mustard	cytosol	55.79	53.54
Bra003768.1-P	Field mustard	cytosol	55.53	53.28
CDY37259	Canola	cytosol	55.53	53.28
CDY46011	Canola	cytosol	55.53	53.28
GSMUA_Achr5P28960_001	Banana	cytosol	60.79	52.98
Solyc04g080220.2.1	Tomato	cytosol	53.95	52.97
GSMUA_Achr6P33890_001	Banana	cytosol	51.84	51.44
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	32.63	40.39
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	34.21	39.76
GSMUA_Achr3P29550_001	Banana	cytosol	36.58	39.04
GSMUA_Achr4P32590_001	Banana	cytosol	46.05	38.72
GSMUA_Achr6P24020_001	Banana	cytosol	40.79	38.65
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	45.26	37.55
GSMUA_Achr9P25120_001	Banana	mitochondrion	32.63	36.8
GSMUA_Achr10P...	Banana	cytosol	37.63	36.76
GSMUA_Achr6P16820_001	Banana	cytosol	42.63	36.73
GSMUA_Achr7P00620_001	Banana	mitochondrion	38.16	35.63
GSMUA_Achr10P...	Banana	plastid	38.68	35.08
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	42.89	33.96
GSMUA_Achr2P13470_001	Banana	cytosol	38.68	33.49
GSMUA_Achr2P21540_001	Banana	plastid	38.16	33.18
Bra031821.1-P	Field mustard	cytosol	58.68	29.77

Protein Annotations

EnsemblPlants:GSMUA_Achr4P27870_001	EnsemblPlants:GSMUA_Achr4T27870_001	EnsemblPlantsGene:GSMUA_Achr4G27870_001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF4
PFAM:PF04788	SEG:seg	UniParc:UPI00029580AA	UniProt:M0SSP9	MapMan:27.4.5.3	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27870_001]

Coordinates

chr4:+:26527223..26528973

Molecular Weight (calculated)

42160.2 Da

IEP (calculated)

6.717

GRAVY (calculated)

-0.312

Length

380 amino acids

Sequence
(BLAST)

001: MRKLCPNFDR EDALDTVLEV PIPEEMFANM GTGAARWQNM RTWLKAQAFD RAATDAPTEL SGRSAELQLL LNVVGSPLIP CPVPIDRAFS RSIRDSSIQA
101: STAKYIIQQY IAATGGQAAL TSVNSMYAVG KVKMSASEFH VGDQTVAAKG SGEIGGYVLW QKNPDVWYFE LIMAGCKMSA GSDGKVAWRQ SASEQSHASR
201: GPPRPLRRSL QGLDPRSTAN LFSDAVCIGE KIINGEECFI LKLEANPATL RARSAATFDI IHHKIWGYFS QRTGLLIQLE DTHLLRMKAG RRGESIFWET
301: SMESVIEDYR YINSINIAHA GRTMVTLFRY GEGSVNHKRK MEESWTIEEV DFNLWGLSTE CFLPPANLKK EQDGDDSHGG

Best Arabidopsis Sequence Match ( AT5G66740.1 )
(BLAST)

001: MRKLCPNIDK DDGLETVLEV PIPEEMFSGM GNNVALRWQN MMTWMKAQTS DKWSQPLIAA RINELRFLLY LVGSPLIPLQ VQVGHSVHKP VKDCSIQAST
101: AKYIVQQYIA ATGGPQALNA VNSMCVTGQV KMTASEFHQG DDSGVNLKSN DEMGGFVLWQ KDPDLWCLEL VVSGCKVICG SNGRLSWRHS SNQQTPASTG
201: TPRPLRRFLQ GLDPRSTANL FLDATCIGEK IINGEDCFIL KLETSPAVRE AQSGPNFEII HHTIWGYFSQ RSGLLIQFED SRLLRMRTKE DEDVFWETSA
301: ESVMDDYRYV DNVNIAHGGK TSVTVFRYGE ASANHRRQMT EKWRIEEVDF NVWGLSVDHF LPPANLQIEK

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT5G66740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.