Factsheet for PGSC0003DMT400038589

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, peroxisome

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085490.1.1	Tomato	cytosol, nucleus, peroxisome	98.66	98.66
VIT_04s0023g01510.t01	Wine grape	cytosol	71.58	73.55
AT5G66740.1	Thale cress	cytosol	72.12	72.7
Bra012096.1-P	Field mustard	cytosol	71.05	71.82
CDY53851	Canola	cytosol	71.05	71.82
CDY30758	Canola	cytosol	71.05	71.82
Bra023074.1-P	Field mustard	plastid	64.88	71.18
CDY49838	Canola	cytosol	69.97	70.73
CDY52160	Canola	cytosol	69.71	70.46
KRH76791	Soybean	cytosol	69.44	69.25
KRH28651	Soybean	cytosol	68.9	67.99
GSMUA_Achr4P27870_001	Banana	cytosol	58.45	57.37
PGSC0003DMT400036213	Potato	cytosol	37.27	54.72
TraesCS3A01G302500.1	Wheat	cytosol	56.03	54.43
GSMUA_Achr2P13560_001	Banana	cytosol	54.96	54.38
TraesCS3B01G333900.1	Wheat	cytosol	56.03	54.29
Zm00001d012676_P001	Maize	cytosol	55.5	54.19
TraesCS3D01G299300.1	Wheat	cytosol	55.76	54.17
Zm00001d043364_P001	Maize	mitochondrion	17.43	53.72
OQU89854	Sorghum	cytosol	55.23	53.65
EES03659	Sorghum	cytosol	54.96	53.39
PGSC0003DMT400013218	Potato	cytosol	54.16	52.2
HORVU3Hr1G073950.2	Barley	plastid	54.96	47.45
PGSC0003DMT400059652	Potato	cytosol	52.01	46.3
PGSC0003DMT400069765	Potato	cytosol	52.28	43.92
PGSC0003DMT400069768	Potato	cytosol	21.18	39.3
PGSC0003DMT400066079	Potato	cytosol	33.78	35.8
Bra031821.1-P	Field mustard	cytosol	69.17	34.45
PGSC0003DMT400066530	Potato	plastid	42.63	33.83
PGSC0003DMT400055468	Potato	plastid	42.36	33.62

Protein Annotations

EnsemblPlants:PGSC0003DMT400038589	EnsemblPlantsGene:PGSC0003DMG400014908	EntrezGene:102595054	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF9
PFAM:PF04788	PGSC:PGSC0003DMG400014908	RefSeq:XP_006340927.1	UniParc:UPI0002956807	UniProt:M1B753	MapMan:27.4.5.3

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014908]

Coordinates

chr2:-:40683300..40684979

Molecular Weight (calculated)

42144.2 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.369

Length

373 amino acids

Sequence
(BLAST)

001: MRILCPNVDK EDGLETVLEV PIPDEMFKSM GSNAALRWQN MATWMKAQTS DKWSSPIVAA RYNELSFLLY MVGSPLIPFQ IQLGQSVNRP VKHSSIEAST
101: AKYILQQYIA ATGGQPALNA VNSMCVIGHV KITGSDFHQG DQSVKVRKSD ENGGFVLWQK NPDLWCLELL ISGCKVISGS NGKISWRQSS NQIRPISKGP
201: PRPLRRFLQG LDPRSIANLF ANAVCIGEKI INEEDCFILK LDTNQSALEA QSGPNYEILH HTIWGYFSQR SGLMIKFEDS RLLTVKTSRD DEGVFWETST
301: ESVMEDYKHV EGVNVAHSGK TFVTVFRYGE QSANHKRQLE ERWKIEEVDF NVGRLTTDFF MPPSDFDKER ARV

Best Arabidopsis Sequence Match ( AT5G66740.1 )
(BLAST)

001: MRKLCPNIDK DDGLETVLEV PIPEEMFSGM GNNVALRWQN MMTWMKAQTS DKWSQPLIAA RINELRFLLY LVGSPLIPLQ VQVGHSVHKP VKDCSIQAST
101: AKYIVQQYIA ATGGPQALNA VNSMCVTGQV KMTASEFHQG DDSGVNLKSN DEMGGFVLWQ KDPDLWCLEL VVSGCKVICG SNGRLSWRHS SNQQTPASTG
201: TPRPLRRFLQ GLDPRSTANL FLDATCIGEK IINGEDCFIL KLETSPAVRE AQSGPNFEII HHTIWGYFSQ RSGLLIQFED SRLLRMRTKE DEDVFWETSA
301: ESVMDDYRYV DNVNIAHGGK TSVTVFRYGE ASANHRRQMT EKWRIEEVDF NVWGLSVDHF LPPANLQIEK

Arabidopsis Description

Protein of unknown function (DUF620) [Source:TAIR;Acc:AT5G66740]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.