Factsheet for PGSC0003DMT400066530

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400062329
PGSC0003DMT400063227
PGSC0003DMT400063229

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49840.1	PGSC0003DMT400062329	AT1G21840.1	21798944
AT3G19540.1	PGSC0003DMT400063227	AT5G62880.1	21798944
AT3G19540.1	PGSC0003DMT400063229	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107350.2.1	Tomato	plastid	97.23	97.23
VIT_03s0091g00410.t01	Wine grape	plastid	85.53	84.63
KRG91072	Soybean	plastid	81.91	83.15
KRH35700	Soybean	plastid	81.49	82.9
PGSC0003DMT400055468	Potato	plastid	78.09	78.09
CDY50147	Canola	mitochondrion	72.13	77.22
CDX95439	Canola	mitochondrion	70.85	76.55
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	74.04	75.98
Bra038214.1-P	Field mustard	mitochondrion, plastid	73.83	75.6
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	49.15	75.24
CDY46168	Canola	mitochondrion	72.34	74.56
CDY67693	Canola	mitochondrion	71.91	74.45
AT3G19540.1	Thale cress	plastid	76.81	74.43
Bra022430.1-P	Field mustard	mitochondrion, plastid	74.04	74.2
GSMUA_Achr6P16820_001	Banana	cytosol	68.51	73.02
GSMUA_Achr4P32590_001	Banana	cytosol	70.21	73.01
Os12t0581300-01	Rice	cytosol	24.47	72.78
GSMUA_Achr10P...	Banana	cytosol	59.15	71.47
CDY16530	Canola	plastid	68.51	71.24
OQU79433	Sorghum	cytosol	67.45	70.6
GSMUA_Achr10P...	Banana	plastid	62.77	70.41
TraesCS5B01G078600.2	Wheat	cytosol	64.26	70.23
CDY32838	Canola	plastid	67.87	70.11
GSMUA_Achr7P00620_001	Banana	mitochondrion	60.64	70.02
Os03t0606100-01	Rice	cytosol	65.53	70.0
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	67.87	69.8
TraesCS4B01G077800.1	Wheat	cytosol	67.66	69.58
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	67.66	69.58
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	68.09	69.57
TraesCS5A01G072300.1	Wheat	cytosol	68.51	69.55
TraesCS5D01G085100.1	Wheat	cytosol	68.51	69.55
GSMUA_Achr6P24020_001	Banana	cytosol	58.94	69.08
AT1G49840.1	Thale cress	plastid	72.13	68.62
Bra014219.1-P	Field mustard	plastid	70.85	68.24
GSMUA_Achr2P21540_001	Banana	plastid	62.98	67.73
GSMUA_Achr2P13470_001	Banana	cytosol	63.19	67.65
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	68.51	67.08
TraesCS2D01G192800.1	Wheat	nucleus	70.85	65.81
EER91248	Sorghum	cytosol	65.11	65.52
TraesCS2B01G211900.1	Wheat	nucleus	70.85	65.42
TraesCS2A01G194900.1	Wheat	nucleus	70.64	65.35
Zm00001d030837_P001	Maize	cytosol, mitochondrion	66.17	65.06
Os07t0591100-01	Rice	nucleus	70.85	64.29
EER99634	Sorghum	nucleus	71.28	64.18
Zm00001d013746_P001	Maize	cytosol	62.98	63.93
OQU92347	Sorghum	mitochondrion, plastid	65.11	62.83
Zm00001d047324_P001	Maize	cytosol	63.83	61.22
Zm00001d006749_P001	Maize	cytosol	68.3	61.03
Zm00001d022006_P001	Maize	cytosol, plastid	70.21	59.25
HORVU4Hr1G013190.8	Barley	mitochondrion	62.34	58.02
Zm00001d016585_P002	Maize	extracellular, plasma membrane	30.43	56.52
PGSC0003DMT400066079	Potato	cytosol	37.23	49.72
PGSC0003DMT400036213	Potato	cytosol	25.11	46.46
PGSC0003DMT400069768	Potato	cytosol	19.57	45.77
PGSC0003DMT400059652	Potato	cytosol	38.51	43.2
PGSC0003DMT400038589	Potato	cytosol, nucleus, peroxisome	33.83	42.63
PGSC0003DMT400069765	Potato	cytosol	39.57	41.89
PGSC0003DMT400013218	Potato	cytosol	32.98	40.05

Protein Annotations

EnsemblPlants:PGSC0003DMT400066530	EnsemblPlantsGene:PGSC0003DMG400025854	EntrezGene:102594434	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1
PFAM:PF04788	PGSC:PGSC0003DMG400025854	RefSeq:XP_006346333.1	SEG:seg	UniParc:UPI0002957EBD	UniProt:M1CFP3
MapMan:27.4.5.3	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400025854]

Coordinates

chr1:-:83808293..83811435

Molecular Weight (calculated)

51343.4 Da

IEP (calculated)

9.807

GRAVY (calculated)

-0.359

Length

470 amino acids

Sequence
(BLAST)

001: MERKQGFFSA LKEEVVRGLS PGRSRTRSPA RSGSPITSLL RRKKSNSSSN FAPNHEQLIS RSGSLRPLGE TLTPLMEGPD PDGGEVGDSK RVGSSIGHWM
101: KGQLSRTPSA ASTAYSKRSD LRLLLGVMGA PLAPVHVSTS DPLPHLSIKD TPIETSSAQY ILQQYTAASG GQKLQSSIKN AYAMGKLKML ASEFETPTKV
201: VKSRNSARAA ESGGFVLWQM NPDMWYVELA VGGSKVHAGC NGKLVWRHTP WLGAHTAKGT VRPLRRALQG LDPRSTASMF ANARCIGEKK INGEDCFILK
301: LCADPHTLKA RSEGPAEIIR HVLFGYFSQK TGLLVHMEDS HLTRIQSNGA EAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGEM AMSHTKTRME
401: ETWTIEEVAF NVPGLSVDCF IPPADLKSGS ISEACELPQD ERGKSAISLA THRAKVAALE KTHDSWKVEI

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.