CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY00332
CDY30738
CDY45748
CDY56740
CDY68200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19540.1	CDY00332	AT5G62880.1	21798944
AT3G19540.1	CDY30738	AT5G62880.1	21798944
AT3G19540.1	CDY45748	AT5G62880.1	21798944
AT3G19540.1	CDY56740	AT5G62880.1	21798944
AT3G19540.1	CDY68200	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46168	Canola	mitochondrion	97.8	97.37
CDY50147	Canola	mitochondrion	86.34	89.29
CDX95439	Canola	mitochondrion	85.46	89.2
AT3G19540.1	Thale cress	plastid	90.53	84.74
CDY16530	Canola	plastid	72.91	73.23
KRH35700	Soybean	plastid	74.45	73.16
KRG91072	Soybean	plastid	74.45	73.0
CDY32838	Canola	plastid	72.25	72.09
PGSC0003DMT400066530	Potato	plastid	74.45	71.91
Solyc01g107350.2.1	Tomato	plastid	74.23	71.7
VIT_03s0091g00410.t01	Wine grape	plastid	74.01	70.74
GSMUA_Achr3P02230_001	Banana	cytosol, plastid	46.26	68.4
GSMUA_Achr4P14230_001	Banana	cytosol, mitochondrion, nucleus, peroxisome	68.5	67.9
GSMUA_Achr4P32590_001	Banana	cytosol	66.96	67.26
GSMUA_Achr6P16820_001	Banana	cytosol	64.1	65.99
OQU79433	Sorghum	cytosol	63.88	64.59
HORVU5Hr1G018870.3	Barley	cytosol, mitochondrion	64.76	63.91
Os03t0606100-01	Rice	cytosol	61.89	63.86
TraesCS5B01G078600.2	Wheat	cytosol	60.35	63.72
GSMUA_Achr10P...	Banana	cytosol	54.41	63.5
GSMUA_Achr7P00620_001	Banana	mitochondrion	56.83	63.39
Os12t0581300-01	Rice	cytosol	22.03	63.29
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	63.44	63.02
TraesCS5D01G085100.1	Wheat	cytosol	64.1	62.85
TraesCS5A01G072300.1	Wheat	cytosol	64.1	62.85
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	63.22	62.8
TraesCS4B01G077800.1	Wheat	cytosol	63.0	62.58
GSMUA_Achr10P...	Banana	plastid	57.27	62.05
GSMUA_Achr2P21540_001	Banana	plastid	59.69	62.01
GSMUA_Achr6P24020_001	Banana	cytosol	54.63	61.85
GSMUA_Achr2P13470_001	Banana	cytosol	59.03	61.05
GSMUA_Achr7P26350_001	Banana	cytosol, mitochondrion, peroxisome, plastid	64.1	60.62
EER91248	Sorghum	cytosol	61.01	59.31
Zm00001d030837_P001	Maize	cytosol, mitochondrion	62.11	59.0
Zm00001d013746_P001	Maize	cytosol	59.25	58.1
TraesCS2D01G192800.1	Wheat	nucleus	64.32	57.71
TraesCS2B01G211900.1	Wheat	nucleus	64.54	57.56
Os07t0591100-01	Rice	nucleus	65.64	57.53
TraesCS2A01G194900.1	Wheat	nucleus	64.32	57.48
EER99634	Sorghum	nucleus	64.54	56.13
OQU92347	Sorghum	mitochondrion, plastid	59.91	55.85
Zm00001d006749_P001	Maize	cytosol	63.44	54.75
Zm00001d047324_P001	Maize	cytosol	58.59	54.29
HORVU4Hr1G013190.8	Barley	mitochondrion	59.47	53.47
Zm00001d016585_P002	Maize	extracellular, plasma membrane	29.52	52.96
CDY03939	Canola	cytosol	13.66	52.54
Zm00001d022006_P001	Maize	cytosol, plastid	63.66	51.89
CDX90103	Canola	mitochondrion, plastid	56.17	50.3
CDY67976	Canola	mitochondrion, plastid	55.73	49.9
CDX79318	Canola	cytosol	8.81	46.51
CDX87382	Canola	mitochondrion	41.63	45.32
CDX88540	Canola	mitochondrion	41.63	45.32
CDY68684	Canola	cytosol, mitochondrion	28.19	44.76
CDY30758	Canola	cytosol	36.34	44.72
CDY53851	Canola	cytosol	36.34	44.72
CDY52160	Canola	cytosol	36.12	44.44
CDY49838	Canola	cytosol	35.9	44.17
CDY55767	Canola	cytosol	35.68	44.02
CDX81011	Canola	cytosol	35.68	44.02
CDY27272	Canola	cytosol, nucleus, plastid	38.11	39.86
CDY02955	Canola	cytosol, nucleus, plastid	35.46	39.85
CDX70123	Canola	cytosol	38.77	39.73
CDX98870	Canola	cytosol	38.77	39.64
CDX76076	Canola	cytosol, nucleus, plastid	34.8	39.11
CDX68146	Canola	cytosol	32.16	38.62
CDY37259	Canola	cytosol	33.48	38.38
CDY46011	Canola	cytosol	33.48	38.38

Protein Annotations

EnsemblPlants:CDY67693	EnsemblPlantsGene:GSBRNA2T00066009001	InterPro:DUF620	PANTHER:PTHR31300	PANTHER:PTHR31300:SF1	PFAM:PF04788
ProteinID:CDY67693	ProteinID:CDY67693.1	SEG:seg	UniParc:UPI0004EDE3E7	UniProt:A0A078JJF3	MapMan:27.4.5.3

Description

BnaCnng55970DBnaCnng55970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJF3]

Coordinates

chrLK036398:+:3563..5717

Molecular Weight (calculated)

49149.4 Da

IEP (calculated)

8.470

GRAVY (calculated)

-0.366

Length

454 amino acids

Sequence
(BLAST)

001: MEKKQGFFSA LRVSPARSSS PMKALSWGKK SSTAGGYCLS QPEFSIGRSG SLRPVMEGPD PDEEGGIGGG ENVGDSKRLG SGLGHWVKGQ LSRAPSVAAT
101: AVCRRNDLRL LLGVMGAPLA PIHVSSSDPL PHLSIKNTPI ETSSAQYILQ QYTAASGGQK LQSSVKNAYA MGKLKMITSE IETASRTVRN RNPSKAESGG
201: FVLWQMDPDM WYVELSVGGN KVRAGCNGKL VWRHTPWLGS HSAKGPVRPL RRGLQGLDPR TTAAMFAEAK CIGEKNVNGE DCFILKLCTD PETLKARSEG
301: PAEIIRHVLS GYFSQKTGLL VHIEDSHLTR IQSNGGDTVF WETTYNSSLD DYRQVEGIMI AHSGHSVVTL FRFGEEAMSH TRTKMEESWT IEEVAFNVPG
401: LSLDCFIPPA DLKTGSVTEY PQEEIGKNNN AVVLSAAHRA KVAALENGSF EANR

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.