Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16820_001 | Banana | cytosol | 79.91 | 82.99 |
| GSMUA_Achr10P... | Banana | cytosol | 68.78 | 80.98 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 76.86 | 77.88 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 51.31 | 76.55 |
| KRG91072 | Soybean | plastid | 76.64 | 75.81 |
| KRH35700 | Soybean | plastid | 76.42 | 75.76 |
| GSMUA_Achr6P24020_001 | Banana | cytosol | 66.16 | 75.56 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 77.73 | 74.95 |
| Solyc01g107350.2.1 | Tomato | plastid | 76.42 | 74.47 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 75.98 | 74.2 |
| PGSC0003DMT400066530 | Potato | plastid | 75.98 | 74.04 |
| GSMUA_Achr7P26350_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 77.07 | 73.54 |
| GSMUA_Achr10P... | Banana | plastid | 66.16 | 72.31 |
| KRH15430 | Soybean | plastid | 74.02 | 71.67 |
| KRH05611 | Soybean | plastid | 74.45 | 71.64 |
| PGSC0003DMT400055468 | Potato | plastid | 73.36 | 71.49 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 68.12 | 71.4 |
| CDY50147 | Canola | mitochondrion | 68.12 | 71.07 |
| CDX95439 | Canola | mitochondrion | 67.47 | 71.03 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 62.88 | 70.76 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 66.16 | 69.02 |
| CDY67693 | Canola | mitochondrion | 67.9 | 68.5 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 68.56 | 68.41 |
| AT3G19540.1 | Thale cress | plastid | 72.05 | 68.04 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 69.65 | 68.02 |
| CDY46168 | Canola | mitochondrion | 67.69 | 67.98 |
| CDY16530 | Canola | plastid | 63.76 | 64.6 |
| CDY32838 | Canola | plastid | 63.1 | 63.52 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 40.39 | 63.14 |
| AT1G27690.1 | Thale cress | plastid | 59.39 | 62.82 |
| AT1G49840.1 | Thale cress | plastid | 66.81 | 61.94 |
| Bra014219.1-P | Field mustard | plastid | 65.5 | 61.48 |
| CDY03939 | Canola | cytosol | 15.28 | 59.32 |
| CDX90103 | Canola | mitochondrion, plastid | 57.21 | 51.68 |
| CDY67976 | Canola | mitochondrion, plastid | 57.21 | 51.68 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 60.04 | 51.5 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 35.15 | 49.24 |
| GSMUA_Achr3P29550_001 | Banana | cytosol | 37.99 | 48.88 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 40.17 | 48.55 |
| GSMUA_Achr9P25120_001 | Banana | mitochondrion | 34.28 | 46.59 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 43.45 | 45.64 |
| GSMUA_Achr4P27870_001 | Banana | cytosol | 37.55 | 45.26 |
| GSMUA_Achr2P13560_001 | Banana | cytosol | 36.68 | 44.56 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 34.06 | 40.73 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14230_001 | EnsemblPlants:GSMUA_Achr4T14230_001 | EnsemblPlantsGene:GSMUA_Achr4G14230_001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF1 |
| PFAM:PF04788 | SEG:seg | UniParc:UPI0002960FA3 | UniProt:M0SNT8 | MapMan:27.4.5.3 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14230_001]
Coordinates
chr4:-:10647409..10649279
Molecular Weight (calculated)
49525.3 Da
IEP (calculated)
9.598
GRAVY (calculated)
-0.236
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKQGLFSA LEEVVRGLSP ARSRAKSQSP SAALLLLPRR FRPGGEALAP LMEGPDGDAP EDGGGTRREG WGRWVRGQLS RAPSVTSSPA NAAGSSSFRR
101: SDLRLLLGVM GAPLAPMHVS SADPLPHLSI KETPIETSSA QYILQQYTAA SGGLKLQSSI RNAYAMGKVR MVASEFETAT KVVKNRGGSA RAAESGSFVL
201: WQMAPDMWYV ELAVGGSKVH AGSNGQLVWR HTPWLGVHAA KGPVRPLRRA LQGLDPLTTA SMFANARCIG EKKVNGEDCF ILKLCADPQT LKARSEGPAE
301: IIRHVLFGCF SQRTGLLVHM EDSHLTRIQS NAGGDAVYWE TTINSFLDDY RPVEGIMIAH SGRSVVTLFR FGEVAMSHTK TRMEEAWTIE EVAFNVPGLS
401: ADCFIPPADI RRGSVSETCE LPQGERSKTS IGNRAKVAAV DKPHATAASD RIIWRVEV
101: SDLRLLLGVM GAPLAPMHVS SADPLPHLSI KETPIETSSA QYILQQYTAA SGGLKLQSSI RNAYAMGKVR MVASEFETAT KVVKNRGGSA RAAESGSFVL
201: WQMAPDMWYV ELAVGGSKVH AGSNGQLVWR HTPWLGVHAA KGPVRPLRRA LQGLDPLTTA SMFANARCIG EKKVNGEDCF ILKLCADPQT LKARSEGPAE
301: IIRHVLFGCF SQRTGLLVHM EDSHLTRIQS NAGGDAVYWE TTINSFLDDY RPVEGIMIAH SGRSVVTLFR FGEVAMSHTK TRMEEAWTIE EVAFNVPGLS
401: ADCFIPPADI RRGSVSETCE LPQGERSKTS IGNRAKVAAV DKPHATAASD RIIWRVEV
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.