Factsheet for GSMUA_AchrUn_randomP01010_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08650_001	Banana	nucleus	23.68	66.32
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	34.21	38.72
GSMUA_Achr8P00880_001	Banana	nucleus	37.22	37.08
Solyc06g007880.1.1	Tomato	nucleus	24.44	34.95
CDY69745	Canola	cytosol	31.2	33.88
GSMUA_Achr5P25250_001	Banana	cytosol	33.83	33.33
CDX77379	Canola	cytosol	30.83	32.8
KRH07558	Soybean	nucleus	31.58	32.06
Bra015092.1-P	Field mustard	nucleus	24.81	31.88
PGSC0003DMT400003096	Potato	nucleus	23.68	31.5
AT3G25030.4	Thale cress	cytosol	29.32	31.2
KRH66042	Soybean	nucleus	31.58	30.77
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	37.59	30.67
AT4G13100.2	Thale cress	extracellular	28.2	28.3
Bra029623.1-P	Field mustard	nucleus	21.8	27.1
CDY24647	Canola	nucleus	21.43	26.76
CDY05318	Canola	nucleus	21.05	26.42
Bra001236.1-P	Field mustard	nucleus	20.68	24.89
CDX74062	Canola	cytosol, nucleus, plastid	28.2	22.19
Bra040362.1-P	Field mustard	nucleus	27.82	21.39
AT3G07120.1	Thale cress	nucleus	27.82	20.56
GSMUA_Achr1P18240_001	Banana	nucleus	12.41	18.75
GSMUA_Achr3P12970_001	Banana	cytosol	12.03	18.5

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP01010_001	EnsemblPlants:GSMUA_AchrUn_randomT01010_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG01010_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294A766	UniProt:M0U5B3	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_186.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG01010_001]

Coordinates

chrchrUn_random:-:3551572..3552372

Molecular Weight (calculated)

28918.7 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.530

Length

266 amino acids

Sequence
(BLAST)

001: MEGRQLRRRS VTLSEQLSVG DSSNLRDLLN VRDEDETRLF RRGPCEGREG SVASGGGRTL LDIIQREHEG NGIIAGGISS NGSTWRSLRD RLRPAGAAWE
101: AASSGQSHPT LDPELVASTR PNPDLARSVS RSVSVENSEP GVPESTAMST AAEPPSVNGG GSDEINGREN SEEQPERVSL MALLEQTDRQ WDESRNEEED
201: EVAAEEAMGR GGGMLYVCCV CMVRHKGAAF IPCGHTFCRL CSRELWLSRG SCPLCNGFIL EILDIF

Best Arabidopsis Sequence Match ( AT4G13100.1 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.