Factsheet for VIT_00s0186g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P08650_001	Banana	nucleus	18.1	62.11
GSMUA_Achr8P00880_001	Banana	nucleus	32.21	39.33
CDY05318	Canola	nucleus	24.85	38.21
GSMUA_AchrUn_...	Banana	nucleus	30.67	37.59
CDY24647	Canola	nucleus	24.54	37.56
Bra029623.1-P	Field mustard	nucleus	24.54	37.38
Solyc09g059990.1.1	Tomato	nucleus	28.22	37.25
PGSC0003DMT400077589	Potato	nucleus	28.53	36.47
Zm00001d021038_P001	Maize	nucleus	20.25	35.87
KRG99707	Soybean	nucleus	38.34	35.01
KRH46683	Soybean	nucleus	37.42	34.37
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	19.94	34.21
HORVU4Hr1G069780.1	Barley	nucleus	17.18	33.33
Bra040362.1-P	Field mustard	nucleus	35.28	33.24
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	23.93	33.19
EES04107	Sorghum	nucleus	29.75	32.99
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	17.79	32.58
Bra001236.1-P	Field mustard	nucleus	22.09	32.58
GSMUA_Achr5P25250_001	Banana	cytosol	26.69	32.22
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	18.71	32.11
TraesCS3A01G423800.1	Wheat	cytosol	24.54	31.37
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	18.1	31.05
OQU89743	Sorghum	mitochondrion, nucleus, plastid	19.63	30.77
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	28.83	30.72
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	18.4	30.61
CDX74062	Canola	cytosol, nucleus, plastid	31.6	30.47
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	27.61	30.1
TraesCS7B01G154600.1	Wheat	nucleus	24.23	30.04
Os09t0505000-00	Rice	nucleus	19.63	29.91
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	22.7	29.72
Zm00001d006078_P001	Maize	nucleus	17.48	29.69
Os01t0917900-01	Rice	nucleus	28.22	29.39
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	22.7	29.37
TraesCS7D01G258600.1	Wheat	nucleus	23.62	29.06
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	17.79	29.0
Zm00001d031586_P001	Maize	cytosol	22.09	28.8
AT3G07120.1	Thale cress	nucleus	30.98	28.06
TraesCS7A01G257600.1	Wheat	nucleus	22.7	27.92
HORVU3Hr1G093580.1	Barley	plastid	23.62	27.8
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	19.94	24.16
TraesCS3A01G259800.1	Wheat	nucleus	19.63	23.44
TraesCS3D01G259900.1	Wheat	nucleus	19.33	23.25
HORVU3Hr1G064710.1	Barley	cytosol	18.4	17.49
OQU80845	Sorghum	mitochondrion	24.85	16.91
VIT_12s0059g01370.t01	Wine grape	cytosol	6.75	12.15

Protein Annotations

EntrezGene:100852917	wikigene:100852917	Gene3D:3.30.40.10	MapMan:35.2	EMBL:AM424865	ProteinID:CAN64493
ProteinID:CAN64493.1	ProteinID:CCB62709	ProteinID:CCB62709.1	UniProt:F6I6Z1	EMBL:FN596760	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100852917	wikigene:LOC100852917	PFAM:PF13920	PFscan:PS50089	PFscan:PS51257
PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000210A52D	ArrayExpress:VIT_00s0186g00090
EnsemblPlantsGene:VIT_00s0186g00090	EnsemblPlants:VIT_00s0186g00090.t01	unigene:Vvi.15040	RefSeq:XP_003635011	RefSeq:XP_003635011.1	RefSeq:XP_003635012
RefSeq:XP_003635012.1	RefSeq:XP_003635013	RefSeq:XP_003635013.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chrUn:+:8876296..8878488

Molecular Weight (calculated)

36017.9 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.699

Length

326 amino acids

Sequence
(BLAST)

001: MDPSTLRDRL RTREDDDGRD AWAGLTLGAV LGCEKRPPPG HINRTLLDII RDESTGYKDV LGQPNNNNNK MSWKSFKDRL RIRRAGAAWT SSMPIPASDV
101: PTRSQLSRRQ STRVTMYTTD PPEPTETFEE SPGTPENPLP VEAVQVHNLR PQFSRNNSIR APSRTFSRAD STRLHTGVTD GPVVSRRLSA ALAEERELQR
201: AESAAALGGD DDEAGEEEDE GEGEEEGPEA APRMSLMALL EETDRQAGIV GPAYVLEEEE DEDEEEEAGS GGGIEYNCCV CMVRHKGAAF IPCGHTFCRL
301: CSRELWVSRG NCPLCNGFIL EILDIF

Best Arabidopsis Sequence Match ( AT3G07120.1 )
(BLAST)

001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF

Arabidopsis Description

At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.