Factsheet for TraesCS3A01G423800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	58.82	60.24
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	58.43	59.13
HORVU3Hr1G093580.1	Barley	plastid	54.9	50.54
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	28.63	41.01
HORVU4Hr1G069780.1	Barley	nucleus	26.67	40.48
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	29.02	38.95
EES04107	Sorghum	nucleus	39.22	34.01
Os01t0917900-01	Rice	nucleus	39.61	32.27
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	37.65	32.11
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	22.35	30.0
Solyc06g007880.1.1	Tomato	nucleus	21.57	29.57
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	34.51	28.76
PGSC0003DMT400003096	Potato	nucleus	21.57	27.5
GSMUA_Achr8P00880_001	Banana	nucleus	27.84	26.59
Bra015092.1-P	Field mustard	nucleus	21.57	26.57
CDY69745	Canola	cytosol	25.49	26.53
AT3G25030.4	Thale cress	cytosol	25.88	26.4
CDX77379	Canola	cytosol	25.49	26.0
AT4G13100.2	Thale cress	extracellular	26.67	25.66
CDY05318	Canola	nucleus	20.78	25.0
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	31.37	24.54
Bra001236.1-P	Field mustard	nucleus	21.18	24.43
CDY24647	Canola	nucleus	20.39	24.41
Bra029623.1-P	Field mustard	nucleus	20.39	24.3
KRH66042	Soybean	nucleus	25.88	24.18
KRH07558	Soybean	nucleus	24.71	24.05
TraesCS7A01G257600.1	Wheat	nucleus	24.71	23.77
TraesCS3A01G259800.1	Wheat	nucleus	23.53	21.98
CDX74062	Canola	cytosol, nucleus, plastid	26.27	19.82
Bra040362.1-P	Field mustard	nucleus	26.67	19.65
AT3G07120.1	Thale cress	nucleus	26.27	18.61

Protein Annotations

EnsemblPlants:TraesCS3A01G423800.1	EnsemblPlantsGene:TraesCS3A01G423800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3A:-:666221910..666222677

Molecular Weight (calculated)

28106.5 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.656

Length

255 amino acids

Sequence
(BLAST)

001: MDRRPELRRA MTLKEQLSTP AEPAIRDFLR IPDDDDDDSA EDRPCTLMDA IDRDVRGEGG SGGAINWRPL PHRLWVRRAA GAWHATGSTA KPPRAVASRA
101: SPRSSYKYHP SPGEGSVAVA FTRAPSPRAV VDDDEENDVE EEDGHNDEPP PVAAASTSLM ALLEQTDIHL EADEDGGVTQ CGMVDVNDED GHGDRHEEEE
201: EEEAQVCCVC MVRHKGAAFI PCGHTFCRLC SRELRHARGN CPLCNVFIQD ILQIF

Best Arabidopsis Sequence Match ( AT3G25030.1 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.