Factsheet for TraesCS3D01G419000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	80.72	79.76
HORVU3Hr1G093580.1	Barley	plastid	73.09	65.7
TraesCS3A01G423800.1	Wheat	cytosol	60.24	58.82
HORVU4Hr1G069780.1	Barley	nucleus	34.14	50.6
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	35.74	50.0
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	35.74	46.84
Os01t0917900-01	Rice	nucleus	46.99	37.38
EES04107	Sorghum	nucleus	43.78	37.07
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	42.17	35.12
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	25.7	32.0
Bra015092.1-P	Field mustard	nucleus	26.51	31.88
Solyc06g007880.1.1	Tomato	nucleus	22.89	30.65
GSMUA_Achr8P00880_001	Banana	nucleus	30.92	28.84
CDX77379	Canola	cytosol	28.92	28.8
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	34.94	28.43
CDY69745	Canola	cytosol	27.71	28.16
PGSC0003DMT400003096	Potato	nucleus	22.09	27.5
AT3G25030.4	Thale cress	cytosol	26.51	26.4
TraesCS3D01G259900.1	Wheat	nucleus	27.71	25.46
KRH07558	Soybean	nucleus	26.51	25.19
AT4G13100.2	Thale cress	extracellular	26.51	24.91
Bra001236.1-P	Field mustard	nucleus	22.09	24.89
TraesCS7D01G258600.1	Wheat	nucleus	26.1	24.53
KRH66042	Soybean	nucleus	26.51	24.18
CDY24647	Canola	nucleus	19.68	23.0
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	29.72	22.7
Bra029623.1-P	Field mustard	nucleus	19.28	22.43
CDY05318	Canola	nucleus	18.47	21.7
CDX74062	Canola	cytosol, nucleus, plastid	28.11	20.71
Bra040362.1-P	Field mustard	nucleus	25.7	18.5
AT3G07120.1	Thale cress	nucleus	26.51	18.33

Protein Annotations

EnsemblPlants:TraesCS3D01G419000.1	EnsemblPlantsGene:TraesCS3D01G419000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF21	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr3D:-:531679857..531680606

Molecular Weight (calculated)

27316.5 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.702

Length

249 amino acids

Sequence
(BLAST)

001: MDRRPELRRA MTLKEQLSTP AEPAIRDFLR IPDDDDDEER PCTLMDAIDR DVRGEGGAGG AINWRPLRHR LWLRRAAGAW HAAGSETKPS AAASRAAPRS
101: SGKSNYTSGE ASAAFSRAPS LRAVVDDEGG SDVEEEAEDN DLPPPAAAST SLMTLMEQAD GHWDEAGEDG GASRCGSVED NDEDGRGERH EEEEEEELQV
201: CCVCMVRHKG AAFIPCGHTF CRLCSRELRH TRGNCPLCNV FIQDILHIF

Best Arabidopsis Sequence Match ( AT4G13100.1 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.