Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24647 | Canola | nucleus | 85.38 | 84.98 |
| AT3G07120.1 | Thale cress | nucleus | 76.89 | 45.28 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 68.87 | 43.2 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 18.4 | 41.05 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 25.47 | 32.14 |
| Zm00001d021038_P001 | Maize | nucleus | 24.53 | 28.26 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 25.0 | 27.89 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 22.64 | 26.97 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 38.21 | 24.85 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 24.06 | 24.52 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 20.75 | 23.16 |
| Zm00001d006078_P001 | Maize | nucleus | 20.75 | 22.92 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.23 | 22.5 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 28.3 | 22.47 |
| CDX77379 | Canola | cytosol | 26.42 | 22.4 |
| KRG99707 | Soybean | nucleus | 37.26 | 22.13 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 24.53 | 22.13 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 19.81 | 22.11 |
| KRH46683 | Soybean | nucleus | 36.79 | 21.97 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 20.28 | 21.94 |
| EES04107 | Sorghum | nucleus | 29.25 | 21.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.42 | 21.05 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 25.0 | 20.78 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 26.42 | 20.74 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 29.72 | 20.59 |
| CDY69745 | Canola | cytosol | 23.58 | 20.41 |
| Os09t0505000-00 | Rice | nucleus | 20.28 | 20.09 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 28.3 | 20.07 |
| Os01t0917900-01 | Rice | nucleus | 29.25 | 19.81 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 21.7 | 18.47 |
| Zm00001d031586_P001 | Maize | cytosol | 21.7 | 18.4 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 22.64 | 18.25 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 22.64 | 18.11 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 22.64 | 18.11 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.75 | 17.46 |
| HORVU3Hr1G093580.1 | Barley | plastid | 21.7 | 16.61 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 20.28 | 15.99 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 20.28 | 15.87 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 20.28 | 15.75 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 18.4 | 11.37 |
| OQU80845 | Sorghum | mitochondrion | 24.06 | 10.65 |
| CDX79140 | Canola | cytosol | 8.96 | 9.13 |
| CDY21289 | Canola | nucleus | 8.02 | 8.42 |
| CDX82926 | Canola | nucleus | 7.55 | 7.96 |
| CDX98736 | Canola | nucleus | 7.08 | 7.46 |
| CDY08650 | Canola | cytosol | 6.6 | 6.64 |
| CDY32036 | Canola | cytosol | 6.6 | 6.64 |
| CDX90849 | Canola | nucleus | 6.13 | 6.44 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078F0B4 | EnsemblPlants:CDY05318 | ProteinID:CDY05318 | ProteinID:CDY05318.1 |
| ncoils:Coil | EnsemblPlantsGene:GSBRNA2T00120149001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PFscan:PS50089 |
| PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0004EC5256 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaC05g44850D
Coordinates
chrLK031960:+:1043543..1044181
Molecular Weight (calculated)
23619.9 Da
IEP (calculated)
4.033
GRAVY (calculated)
-0.890
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MSENPPGSSG RGMFTRGPSM RVGSSKNPDD FADVSIPGDG PPSRSFKPQF SRHDSVRDHG DGEDDKILRH PVVKFEDERQ MSAREAVAAQ EAAEAEEDDE
101: EDEDDSEEET EEKSSAPKQT MSLMDLLEET DRQMGLTGAR YAMDEEDEED EDEEEEEEEG ELSCCVCHVH IKGATFAPCG HTFCKLCSKE LMAQKGHCPV
201: CISFVLEFLE IF
101: EDEDDSEEET EEKSSAPKQT MSLMDLLEET DRQMGLTGAR YAMDEEDEED EDEEEEEEEG ELSCCVCHVH IKGATFAPCG HTFCKLCSKE LMAQKGHCPV
201: CISFVLEFLE IF
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Arabidopsis Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.