Factsheet for TraesCS7A01G257600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G258600.1	Wheat	nucleus	82.64	82.64
TraesCS7B01G154600.1	Wheat	nucleus	77.74	78.33
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	56.98	56.13
Zm00001d031586_P001	Maize	cytosol	48.3	51.2
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	34.34	47.89
GSMUA_Achr5P25250_001	Banana	cytosol	32.08	31.48
Solyc06g007880.1.1	Tomato	nucleus	21.13	30.11
Bra015092.1-P	Field mustard	nucleus	22.26	28.5
AT4G13100.2	Thale cress	extracellular	26.79	26.79
PGSC0003DMT400003096	Potato	nucleus	19.62	26.0
CDY69745	Canola	cytosol	23.77	25.71
AT3G25030.4	Thale cress	cytosol	23.4	24.8
CDX77379	Canola	cytosol	23.4	24.8
TraesCS3A01G423800.1	Wheat	cytosol	23.77	24.71
CDY24647	Canola	nucleus	19.25	23.94
Bra029623.1-P	Field mustard	nucleus	18.87	23.36
KRH07558	Soybean	nucleus	22.64	22.9
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	27.92	22.7
CDY05318	Canola	nucleus	18.11	22.64
Bra001236.1-P	Field mustard	nucleus	18.11	21.72
KRH66042	Soybean	nucleus	22.26	21.61
OQU80845	Sorghum	mitochondrion	37.74	20.88
TraesCS3A01G259800.1	Wheat	nucleus	18.11	17.58
CDX74062	Canola	cytosol, nucleus, plastid	20.75	16.27
Bra040362.1-P	Field mustard	nucleus	19.62	15.03
AT3G07120.1	Thale cress	nucleus	18.49	13.61

Protein Annotations

EnsemblPlants:TraesCS7A01G257600.1	EnsemblPlantsGene:TraesCS7A01G257600	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR12183	PANTHER:PTHR12183:SF17	PFAM:PF13920	PFscan:PS50089
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16449	MapMan:35.2

Description

No Description!

Coordinates

chr7A:-:247251367..247252470

Molecular Weight (calculated)

27350.2 Da

IEP (calculated)

4.476

GRAVY (calculated)

-0.204

Length

265 amino acids

Sequence
(BLAST)

001: MEGRVLRRSV TLADQLAAVG PPAAAPPGQP GSCNLRDLLK LRDEDDGRRA AAVTLASAMQ ADRRASSSPP SSSAAVAAAA ARTLLDIIRD DQPAPPASHA
101: VVSATGVGDP FVRRAVSLPA PGPALTRPVA APVTPPEASP PQPPTDQAAE EEEEQGERVS LMALLEQTER QWSAGATAQQ EQEQDPAVAA SEPSSQDALV
201: PEDDAELPEP GRGAGCCCVC MARAKGAAFI PCGHTFCRAC ARELLAGRGR CPLCNAAILD VLDIF

Best Arabidopsis Sequence Match ( AT3G25030.2 )
(BLAST)

001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF

Arabidopsis Description

At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.