CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001236.1-P	Field mustard	nucleus	60.95	93.21
CDY24647	Canola	nucleus	43.49	69.01
CDY05318	Canola	nucleus	43.2	68.87
AT3G07120.1	Thale cress	nucleus	64.5	60.56
GSMUA_Achr8P08650_001	Banana	nucleus	11.24	40.0
CDX77379	Canola	cytosol	23.67	32.0
KRG99707	Soybean	nucleus	33.73	31.93
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	30.47	31.6
HORVU4Hr1G069780.1	Barley	nucleus	15.38	30.95
KRH46683	Soybean	nucleus	32.25	30.7
Zm00001d021038_P001	Maize	nucleus	16.27	29.89
HORVU5Hr1G123180.1	Barley	cytosol, nucleus	16.57	29.47
CDY69745	Canola	cytosol	21.3	29.39
HORVU1Hr1G049430.2	Barley	cytosol, nucleus, plastid	15.09	28.65
Zm00001d006078_P001	Maize	nucleus	16.27	28.65
GSMUA_AchrUn_...	Banana	nucleus	22.19	28.2
TraesCS3D01G419000.1	Wheat	cytosol, mitochondrion, nucleus	20.71	28.11
HORVU5Hr1G075810.1	Barley	mitochondrion, nucleus	15.68	27.89
TraesCS5D01G291000.1	Wheat	cytosol, mitochondrion, nucleus	16.27	27.5
EES04107	Sorghum	nucleus	23.67	27.21
Zm00001d042359_P001	Maize	cytosol, mitochondrion, nucleus	23.96	26.47
OQU89743	Sorghum	mitochondrion, nucleus, plastid	16.27	26.44
TraesCS5A01G283800.1	Wheat	mitochondrion, nucleus, peroxisome	14.79	26.32
TraesCS3A01G423800.1	Wheat	cytosol	19.82	26.27
TraesCS3B01G459700.1	Wheat	cytosol, mitochondrion, nucleus	19.53	26.19
TraesCS5B01G282300.1	Wheat	cytosol, mitochondrion, nucleus	15.09	26.02
GSMUA_Achr8P00880_001	Banana	nucleus	20.12	25.47
Zm00001d012045_P001	Maize	cytosol, mitochondrion, nucleus	22.49	25.42
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	16.86	24.26
Os09t0505000-00	Rice	nucleus	15.09	23.83
GSMUA_Achr5P25250_001	Banana	cytosol	18.64	23.33
HORVU3Hr1G093580.1	Barley	plastid	18.93	23.1
Os01t0917900-01	Rice	nucleus	21.3	23.0
Zm00001d031586_P001	Maize	cytosol	16.86	22.8
TraesCS7A01G257600.1	Wheat	nucleus	16.27	20.75
TraesCS3D01G259900.1	Wheat	nucleus	16.27	20.3
TraesCS3A01G259800.1	Wheat	nucleus	16.27	20.15
TraesCS7D01G258600.1	Wheat	nucleus	15.68	20.0
TraesCS7B01G154600.1	Wheat	nucleus	15.09	19.39
HORVU7Hr1G053470.4	Barley	cytosol, mitochondrion, plastid	14.5	18.22
OQU80845	Sorghum	mitochondrion	22.19	15.66
HORVU3Hr1G064710.1	Barley	cytosol	15.38	15.16
CDY21289	Canola	nucleus	7.1	11.88
CDX79140	Canola	cytosol	7.1	11.54
CDX82926	Canola	nucleus	6.51	10.95
CDY32036	Canola	cytosol	6.8	10.9
CDX90849	Canola	nucleus	6.51	10.89
CDY08650	Canola	cytosol	6.51	10.43
CDX98736	Canola	nucleus	5.92	9.95

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078CB56	EnsemblPlants:CDX74062	ProteinID:CDX74062	ProteinID:CDX74062.1
ncoils:Coil	EnsemblPlantsGene:GSBRNA2T00111810001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PFscan:PS50089
PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EDD85A	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

BnaA03g29850D

Coordinates

chrLK031800:-:1142685..1143908

Molecular Weight (calculated)

37066.8 Da

IEP (calculated)

4.315

GRAVY (calculated)

-0.744

Length

338 amino acids

Sequence
(BLAST)

001: MSALKSRSNS LAGLTLDAVL GGEIVIQPSS PPSPPPLPQQ SLLPQRSTTS QTLFDIIRDE YEKEGHKDRT TWQIFREKLR LKRTGSAWTS SFHIPASDIL
101: IPNPKQTRSH TNGLVYPIPM SDPPGSSGRG MFTRGSSMRV GSGKTPENNF ADVSIPGDGP PFKPQLSRHD SVRDHGDGDD DKIRRHPVVK FVDERQMSAR
201: EAVAAQEAAE AETASDDEEE EEDDGFGEAE EEEASSAPKQ TMSLMDLLEE TDRQMGLTGA RYAMDDGEDE YEEDEDEEEE EEDGGGGEGE VSCCVCQVKI
301: KGATFTSCGH TFCKLCSKEL MAQKGHCPVC TTFVLEIF

Best Arabidopsis Sequence Match ( AT3G07120.1 )
(BLAST)

001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF

Arabidopsis Description

At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.