CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034501.1-P	Field mustard	cytosol	96.21	96.21
CDY32036	Canola	cytosol	95.26	95.26
AT1G62370.1	Thale cress	cytosol	59.72	61.76
CDX90849	Canola	nucleus	36.49	38.12
KRH36518	Soybean	mitochondrion	35.07	37.76
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	36.49	36.84
CDX82926	Canola	nucleus	35.07	36.82
CDY21289	Canola	nucleus	35.07	36.63
GSMUA_Achr1P18240_001	Banana	nucleus	30.33	36.36
GSMUA_Achr3P12970_001	Banana	cytosol	29.38	35.84
CDX79140	Canola	cytosol	33.65	34.13
CDX98736	Canola	nucleus	32.23	33.83
CDY69745	Canola	cytosol	13.27	11.43
CDX77379	Canola	cytosol	12.8	10.8
CDY05318	Canola	nucleus	6.64	6.6
CDY24647	Canola	nucleus	6.64	6.57
CDX74062	Canola	cytosol, nucleus, plastid	10.43	6.51

Protein Annotations

EnsemblPlants:CDY08650	EnsemblPlantsGene:GSBRNA2T00000476001	Gene3D:3.30.40.10	GO:A0A078F2D3	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF35	PFAM:PF13920	PFscan:PS50089
ProteinID:CDY08650	ProteinID:CDY08650.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EAB80E
UniProt:A0A078F2D3	MapMan:35.2	:	:	:	:

Description

BnaC04g19590DBnaC04g19590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2D3]

Coordinates

chrLK031987:+:459806..460441

Molecular Weight (calculated)

23375.6 Da

IEP (calculated)

4.335

GRAVY (calculated)

-0.424

Length

211 amino acids

Sequence
(BLAST)

001: MSQLGDLLRE SADETRSGRT MMLSLLEEDR IDGEDRATSK WSTLKQRLRF DWVGCCGGPT LLRLRGSEAP VAEEDEDDEE EEETSGQNRV VNLSNSVRDP
101: GLVVDTECLT RGTRNLAEAL AEERLARGEN VTEASVAKVP LMKLLAETEG CDATTWTGAD PLCCVCMGRE KGAAFIPCGH TYCRVCSREI WMNRGSCPLC
201: NRSIFDVLDL Y

Best Arabidopsis Sequence Match ( AT1G62370.1 )
(BLAST)

001: MSQLGDLLRE SEDGTRSERT MMMSLLEEDQ INGGDRTMSK WTTLKQRLRF DWVGCCGKPL TLRLRQAETP IVVDDDDDEE ESQNQVVDFS DPGTGTELDC
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY

Arabidopsis Description

F2401.10 [Source:UniProtKB/TrEMBL;Acc:O48801]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.