Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08650 | Canola | cytosol | 61.76 | 59.72 |
| Bra034501.1-P | Field mustard | cytosol | 60.29 | 58.29 |
| CDY32036 | Canola | cytosol | 59.31 | 57.35 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 41.18 | 40.19 |
| KRH36518 | Soybean | mitochondrion | 37.75 | 39.29 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 32.84 | 38.07 |
| AT4G03965.1 | Thale cress | cytosol | 38.24 | 37.32 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 29.9 | 35.26 |
| AT4G22250.1 | Thale cress | cytosol | 34.8 | 33.18 |
| AT3G25030.4 | Thale cress | cytosol | 14.22 | 11.6 |
| AT4G13100.2 | Thale cress | extracellular | 11.27 | 8.68 |
| AT3G07120.1 | Thale cress | nucleus | 9.31 | 5.28 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:842535 | ProteinID:AAF70837.1 | ProteinID:AEE33959.1 | ArrayExpress:AT1G62370 |
| EnsemblPlantsGene:AT1G62370 | RefSeq:AT1G62370 | TAIR:AT1G62370 | RefSeq:AT1G62370-TAIR-G | EnsemblPlants:AT1G62370.1 | TAIR:AT1G62370.1 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_176427.1 | UniProt:O48801 | PFAM:PF13920 | PO:PO:0000293 |
| PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF35 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A25E4 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
F2401.10 [Source:UniProtKB/TrEMBL;Acc:O48801]
Coordinates
chr1:+:23072222..23073545
Molecular Weight (calculated)
22915.1 Da
IEP (calculated)
4.281
GRAVY (calculated)
-0.449
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQLGDLLRE SEDGTRSERT MMMSLLEEDQ INGGDRTMSK WTTLKQRLRF DWVGCCGKPL TLRLRQAETP IVVDDDDDEE ESQNQVVDFS DPGTGTELDC
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY
101: LTRGSTRNLA EALAEERLAH VTEEETAVTK VPLMRLLAES DGCDSTTTWL GNDPLCCVCM GREKGAAFIP CGHTYCRVCS REIWMNRGTC PLCNRSIFDV
201: LDLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.