Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82926 | Canola | nucleus | 65.89 | 70.15 |
| CDX98736 | Canola | nucleus | 63.08 | 67.16 |
| Bra019391.1-P | Field mustard | nucleus | 58.88 | 63.96 |
| CDX79140 | Canola | cytosol | 61.22 | 62.98 |
| AT4G03965.1 | Thale cress | cytosol | 61.22 | 62.68 |
| Bra013603.1-P | Field mustard | cytosol | 52.8 | 55.66 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 35.98 | 44.51 |
| Solyc02g081180.1.1 | Tomato | nucleus | 41.59 | 43.84 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 35.98 | 43.75 |
| PGSC0003DMT400043086 | Potato | nucleus | 41.12 | 42.31 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 41.59 | 36.93 |
| Solyc03g031830.1.1 | Tomato | nucleus | 41.59 | 36.33 |
| AT1G62370.1 | Thale cress | cytosol | 33.18 | 34.8 |
| AT3G25030.4 | Thale cress | cytosol | 13.55 | 11.6 |
| AT4G13100.2 | Thale cress | extracellular | 12.15 | 9.81 |
| AT3G07120.1 | Thale cress | nucleus | 11.21 | 6.67 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:828320 | ProteinID:AEE84582.1 | EMBL:AK118292 | ArrayExpress:AT4G22250 |
| EnsemblPlantsGene:AT4G22250 | RefSeq:AT4G22250 | TAIR:AT4G22250 | RefSeq:AT4G22250-TAIR-G | EnsemblPlants:AT4G22250.1 | TAIR:AT4G22250.1 |
| EMBL:BT005602 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_193956.2 | PFAM:PF13920 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 |
| UniProt:Q8GXD8 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000000C6C9 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
Coordinates
chr4:-:11767455..11768563
Molecular Weight (calculated)
24061.9 Da
IEP (calculated)
6.036
GRAVY (calculated)
-0.433
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.