Factsheet for Solyc03g031830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1
Solyc03g093680.2.1
Solyc08g059700.1.1
Solyc09g098160.2.1
Solyc09g098180.2.1
Solyc10g005020.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22250.1	Solyc03g093680.2.1	AT1G02140.1	21798944
AT4G22250.1	Solyc09g098160.2.1	AT3G59220.1	21798944
AT4G22250.1	Solyc09g098180.2.1	AT3G59220.1	21798944
AT4G22250.1	Solyc10g005020.2.1	AT3G61920.1	21798944
AT4G22250.1	Solyc02g021650.2.1	AT4G05420.1	21798944
AT4G22250.1	Solyc08g059700.1.1	AT4G32295.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061842	Potato	mitochondrion	58.37	59.34
KRH36518	Soybean	mitochondrion	39.59	49.49
Solyc02g081180.1.1	Tomato	nucleus	40.41	48.77
GSMUA_Achr1P18240_001	Banana	nucleus	34.29	47.73
GSMUA_Achr3P12970_001	Banana	cytosol	31.43	44.51
KRH02010	Soybean	cytosol	35.92	44.44
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	37.14	43.54
Bra000784.1-P	Field mustard	nucleus	35.51	43.07
CDX90849	Canola	nucleus	35.51	43.07
CDY21289	Canola	nucleus	35.51	43.07
KRH51146	Soybean	cytosol	36.33	43.0
AT4G03965.1	Thale cress	cytosol	36.33	42.58
AT4G22250.1	Thale cress	cytosol	36.33	41.59
Solyc07g049400.1.1	Tomato	mitochondrion	28.57	41.18
CDX82926	Canola	nucleus	33.47	40.8
Bra019391.1-P	Field mustard	nucleus	32.65	40.61
CDX98736	Canola	nucleus	32.24	39.3
CDX79140	Canola	cytosol	32.65	38.46
Bra013603.1-P	Field mustard	cytosol	24.08	29.06
Solyc06g007880.1.1	Tomato	nucleus	8.16	10.75
Solyc09g059990.1.1	Tomato	nucleus	9.39	9.31

Protein Annotations

EnsemblPlants:Solyc03g031830.1.1	EnsemblPlantsGene:Solyc03g031830.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002767628	UniProt:K4BFF5	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:+:4306771..4307508

Molecular Weight (calculated)

26558.5 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.449

Length

245 amino acids

Sequence
(BLAST)

001: MNGGDRVLRR RKSLTERLGL KRIGCCGSTW GIMPATTFDV VDDEDENDNV EVMSHHIHTP PQTPCLAVAG GGSSGMNLAA ALAAERHFRA DNNEFNTLSG
101: SRPGPNSNSG PLRPDESSPT NVPTYDDNEV NIHSGRRLRP GPNSVSGLPR TDGGVSGNIP GTPTRMSLMR LLEETEVYEG ELLIEKGEEG VGSDSVCCVC
201: MRRKKGAAFI PCGHTFCRVC SRELWVNRGC CPLCNRSILE ILDIY

Best Arabidopsis Sequence Match ( AT4G03965.1 )
(BLAST)

001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.