Factsheet for Solyc09g098160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g099320.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	Solyc01g099320.2.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031070	Potato	mitochondrion	95.53	96.53
VIT_05s0094g00610.t01	Wine grape	cytosol	28.18	75.93
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	76.29	75.51
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	32.65	73.08
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	24.4	71.0
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.79	70.79
TraesCS5B01G535900.1	Wheat	plastid	71.48	70.75
GSMUA_Achr9P01680_001	Banana	cytosol	72.16	70.71
GSMUA_Achr3P02460_001	Banana	cytosol	71.48	70.51
TraesCS4A01G336100.1	Wheat	nucleus	71.13	70.41
TraesCS5D01G533400.1	Wheat	cytosol	70.79	70.07
GSMUA_Achr10P...	Banana	cytosol	70.1	68.46
Solyc09g098180.2.1	Tomato	plastid	77.32	68.18
TraesCS5D01G533500.1	Wheat	plastid	70.45	68.11
Bra000289.1-P	Field mustard	cytosol	65.64	64.75
Bra004746.1-P	Field mustard	plastid	65.64	64.53
KRH01821	Soybean	plastid	71.82	64.51
CDY55513	Canola	plastid	65.29	64.19
KRH46866	Soybean	plastid	71.13	63.69
GSMUA_Achr3P11020_001	Banana	cytosol	65.64	63.46
TraesCS4A01G335900.1	Wheat	plastid	63.23	62.59
Os09t0484800-01	Rice	cytosol, mitochondrion	63.57	62.29
CDY17721	Canola	mitochondrion	41.92	62.24
HORVU5Hr1G120790.2	Barley	cytosol	70.1	62.01
Zm00001d008595_P001	Maize	plastid	70.45	61.93
EER96962	Sorghum	cytosol	62.54	61.9
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	20.96	61.62
AT3G59220.1	Thale cress	cytosol	59.79	60.63
CDX83501	Canola	mitochondrion	66.32	60.31
Zm00001d020915_P002	Maize	cytosol	61.17	60.14
CDY17946	Canola	mitochondrion	65.64	60.06
Os03t0845000-01	Rice	plasma membrane	74.23	59.83
CDY42802	Canola	mitochondrion	65.64	59.5
TraesCS5B01G261100.1	Wheat	mitochondrion	62.2	59.34
OQU90634	Sorghum	mitochondrion	72.51	59.1
TraesCS5D01G270300.1	Wheat	cytosol	61.17	58.75
HORVU5Hr1G072760.2	Barley	mitochondrion	60.82	58.42
Solyc12g014590.1.1	Tomato	mitochondrion	64.95	57.8
TraesCS5A01G262700.1	Wheat	mitochondrion	61.51	57.01
AT3G59260.1	Thale cress	cytosol	52.92	56.83
TraesCS4A01G336000.2	Wheat	nucleus	63.57	55.89
TraesCS5B01G535700.3	Wheat	plastid	70.79	55.83
CDX67787	Canola	nucleus	51.89	55.72
CDY00611	Canola	nucleus	55.33	55.71
TraesCS5B01G536000.2	Wheat	plastid	70.79	55.68
TraesCS4A01G336200.2	Wheat	plastid	69.76	54.86
TraesCS5B01G535800.1	Wheat	plastid	70.1	54.84
TraesCS5D01G533100.1	Wheat	plastid	70.79	54.64
CDX98356	Canola	cytosol	49.48	54.55
CDX89016	Canola	nucleus	54.3	54.48
Bra014547.1-P	Field mustard	nucleus	53.95	54.14
CDY06015	Canola	cytosol	52.58	53.87
Zm00001d034829_P001	Maize	mitochondrion	70.1	53.83
HORVU5Hr1G120780.3	Barley	plastid	70.45	53.39
CDY06016	Canola	cytosol	48.8	53.18
CDY57498	Canola	cytosol	50.52	52.88
AT2G43120.2	Thale cress	nucleus	67.35	52.69
Bra007437.1-P	Field mustard	cytosol	35.05	52.04
CDY57499	Canola	cytoskeleton, cytosol, nucleus	54.3	51.13
Solyc07g065160.2.1	Tomato	mitochondrion	50.86	49.66
Bra003367.1-P	Field mustard	cytosol	32.3	49.21
Bra007438.1-P	Field mustard	cytosol	30.24	47.57
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	32.65	47.26
HORVU5Hr1G120800.4	Barley	plastid	71.48	46.85
TraesCS1B01G420000.1	Wheat	plastid	54.98	44.44
Os08t0364900-00	Rice	plastid	52.58	43.47
TraesCS1D01G400000.1	Wheat	plastid	53.61	43.33
TraesCS1A01G391900.1	Wheat	plastid	53.61	43.09
HORVU5Hr1G120810.1	Barley	plastid	34.02	39.76
EES14882	Sorghum	cytosol, plastid	50.86	39.15
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	52.23	38.19
Zm00001d032363_P001	Maize	cytosol	48.45	37.6
VIT_09s0096g00380.t01	Wine grape	nucleus	14.43	30.0

Protein Annotations

EMBL:AF154003	EnsemblPlants:Solyc09g098160.2.1	EnsemblPlantsGene:Solyc09g098160.2	Gene3D:2.60.120.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom
InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678	PFAM:PF05726
PIRSF:PIRSF006232	SUPFAM:SSF51182	UniParc:UPI0000131B18	UniProt:Q9SEE4	MapMan:35.1	:

Description

Pirin-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9SEE4]

Coordinates

chr9:+:72041699..72043758

Molecular Weight (calculated)

32438.8 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.442

Length

291 amino acids

Sequence
(BLAST)

001: MSMSSIFSRP RLVVKKVLAR AQNEGDGAIV RRSIGRPELQ NLDPFLMLDE FSVSQPAGFP DHPHRGFETV TYMLQGAFTH QDFAGHKGTI RTGDVQWMTA
101: GRGIVHSEMP AGPGTQKGLQ LWINLSSKDK MIEPRYQELL HQDIPKAEKD GVSVTILAGE SMGKKSQVFT RTPTMYLDFT LKPGSEHHQP IPETWNAFLY
201: IVEGEGAFGS SDSTTTPAHH CLVLGPGEGL SVWNKSSKPL RFVLIGGQPI NEPVVQYGPF VMNTKSEIMQ AYQDYQLGKN GFERSRQWYS K

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.