CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU88166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	OQU88166	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020915_P002	Maize	cytosol	93.88	93.24
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	39.8	90.0
Os09t0484800-01	Rice	cytosol, mitochondrion	89.12	88.22
TraesCS5D01G270300.1	Wheat	cytosol	86.05	83.5
TraesCS5B01G261100.1	Wheat	mitochondrion	86.39	83.28
HORVU5Hr1G072760.2	Barley	mitochondrion	85.71	83.17
TraesCS5A01G262700.1	Wheat	mitochondrion	86.73	81.21
GSMUA_Achr3P11020_001	Banana	cytosol	77.89	76.08
PGSC0003DMT400033425	Potato	mitochondrion	70.75	70.99
VIT_19s0090g01530.t01	Wine grape	cytosol	70.75	69.8
KRH14295	Soybean	cytosol	71.09	69.44
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	70.41	68.77
KRH46283	Soybean	mitochondrion	67.35	66.44
VIT_05s0094g00610.t01	Wine grape	cytosol	23.81	64.81
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	67.69	64.19
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	63.95	63.95
PGSC0003DMT400031088	Potato	cytosol	63.95	63.51
Solyc12g014590.1.1	Tomato	mitochondrion	70.41	63.3
CDY22806	Canola	cytosol	66.67	63.02
CDY37125	Canola	cytosol	66.67	63.02
Solyc09g098160.2.1	Tomato	mitochondrion	61.9	62.54
PGSC0003DMT400031070	Potato	mitochondrion	61.22	62.5
Bra018859.1-P	Field mustard	cytosol	65.99	62.38
Bra000289.1-P	Field mustard	cytosol	61.9	61.69
KRG98621	Soybean	nucleus	47.28	61.23
Bra004746.1-P	Field mustard	plastid	60.88	60.47
CDY55513	Canola	plastid	60.2	59.8
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	19.73	58.0
CDX83501	Canola	mitochondrion	62.59	57.5
Solyc09g098180.2.1	Tomato	plastid	63.95	56.97
CDY17946	Canola	mitochondrion	61.56	56.92
CDY42802	Canola	mitochondrion	61.9	56.7
AT3G59220.1	Thale cress	cytosol	55.1	56.45
KRH46866	Soybean	plastid	62.24	56.31
KRH01821	Soybean	plastid	61.9	56.17
CDY17721	Canola	mitochondrion	37.07	55.61
AT3G59260.1	Thale cress	cytosol	50.68	54.98
CDY06015	Canola	cytosol	53.06	54.93
OQU90634	Sorghum	mitochondrion	65.99	54.34
CDY57498	Canola	cytosol	50.68	53.6
CDX67787	Canola	nucleus	48.3	52.4
CDX89016	Canola	nucleus	51.36	52.07
CDX98356	Canola	cytosol	46.6	51.89
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	52.38	51.68
Solyc07g065160.2.1	Tomato	mitochondrion	52.04	51.34
Bra014547.1-P	Field mustard	nucleus	50.34	51.03
Bra007438.1-P	Field mustard	cytosol	31.97	50.81
CDY06016	Canola	cytosol	45.92	50.56
CDY00611	Canola	nucleus	48.64	49.48
CDY57499	Canola	cytoskeleton, cytosol, nucleus	51.02	48.54
Bra007437.1-P	Field mustard	cytosol	32.31	48.47
Bra003367.1-P	Field mustard	cytosol	31.29	48.17
AT2G43120.2	Thale cress	nucleus	60.54	47.85
EES14882	Sorghum	cytosol, plastid	48.98	38.1
VIT_09s0096g00380.t01	Wine grape	nucleus	12.59	26.43

Protein Annotations

EnsemblPlants:EER96962	EnsemblPlantsGene:SORBI_3002G245100	EntrezGene:8064841	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:EER96962	ProteinID:EER96962.1	RefSeq:XP_002460441.1
SUPFAM:SSF51182	UniParc:UPI0001A8379E	UniProt:C5X3V1	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr2:+:63369660..63372006

Molecular Weight (calculated)

32319.7 Da

IEP (calculated)

6.181

GRAVY (calculated)

-0.187

Length

294 amino acids

Sequence
(BLAST)

001: MEKPRQVVRK FLARPQHEGV GAVVRRSIGR FELRYFDPFL VLDEFSVSAP AGFPDHPHRG FETVTYMLEG AVTHEDFEGH RGTIKAGDVQ WMTAGRGIVH
101: SEMPAGPGTS KGLQLWVNLS SGNKMVEPGY QEIQSKDIAC TSADGVTVRV IAGHAMGVRS PVCTRTPTMY LDFTVRPRGV VRQPVLASWN AFAYVLEGEG
201: VFGAERGAPV GAHHLLLLGQ GDGVEVWNRS DDRPLRFLLI AGEPIGEPVA QLGPFVMNTE EEIDMTVNDF ECYANGFEKA RHWKSQAMVA LGVE

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.