Factsheet for Solyc12g014590.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 2
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033425	Potato	mitochondrion	86.24	96.25
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	31.8	80.0
VIT_19s0090g01530.t01	Wine grape	cytosol	68.5	75.17
KRH14295	Soybean	cytosol	69.11	75.08
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	68.5	74.42
GSMUA_Achr3P11020_001	Banana	cytosol	67.28	73.09
KRH46283	Soybean	mitochondrion	65.14	71.48
EER96962	Sorghum	cytosol	63.3	70.41
Os09t0484800-01	Rice	cytosol, mitochondrion	63.3	69.7
KRG98621	Soybean	nucleus	48.32	69.6
Zm00001d020915_P002	Maize	cytosol	62.08	68.58
TraesCS5B01G261100.1	Wheat	mitochondrion	63.91	68.52
GSMUA_Achr3P02460_001	Banana	cytosol	61.16	67.8
TraesCS5D01G270300.1	Wheat	cytosol	62.69	67.66
HORVU5Hr1G072760.2	Barley	mitochondrion	62.39	67.33
GSMUA_Achr9P01680_001	Banana	cytosol	59.94	65.99
TraesCS5A01G262700.1	Wheat	mitochondrion	63.0	65.61
Solyc09g098160.2.1	Tomato	mitochondrion	57.8	64.95
CDY22806	Canola	cytosol	61.47	64.63
GSMUA_Achr10P...	Banana	cytosol	58.72	64.43
Bra018859.1-P	Field mustard	cytosol	61.16	64.31
CDY37125	Canola	cytosol	61.16	64.31
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	59.33	62.58
TraesCS5B01G535900.1	Wheat	plastid	55.96	62.24
TraesCS4A01G336100.1	Wheat	nucleus	55.66	61.9
TraesCS5D01G533400.1	Wheat	cytosol	55.05	61.22
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.52	60.14
TraesCS5D01G533500.1	Wheat	plastid	54.74	59.47
Solyc07g065160.2.1	Tomato	mitochondrion	54.13	59.4
Solyc09g098180.2.1	Tomato	plastid	58.1	57.58
TraesCS4A01G335900.1	Wheat	plastid	49.24	54.76
HORVU5Hr1G120790.2	Barley	cytosol	54.43	54.1
Zm00001d008595_P001	Maize	plastid	54.13	53.47
Os03t0845000-01	Rice	plasma membrane	58.1	52.63
OQU90634	Sorghum	mitochondrion	56.88	52.1
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	15.6	51.52
TraesCS4A01G336000.2	Wheat	nucleus	49.54	48.94
TraesCS5B01G536000.2	Wheat	plastid	55.05	48.65
TraesCS5B01G535800.1	Wheat	plastid	55.05	48.39
TraesCS4A01G336200.2	Wheat	plastid	54.74	48.38
Zm00001d034829_P001	Maize	mitochondrion	55.66	48.02
TraesCS5B01G535700.3	Wheat	plastid	53.82	47.7
TraesCS5D01G533100.1	Wheat	plastid	54.13	46.95
HORVU5Hr1G120780.3	Barley	plastid	53.82	45.83
TraesCS1B01G420000.1	Wheat	plastid	45.87	41.67
TraesCS1D01G400000.1	Wheat	plastid	44.95	40.83
HORVU5Hr1G120800.4	Barley	plastid	55.35	40.77
TraesCS1A01G391900.1	Wheat	plastid	44.95	40.61
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	24.77	40.3
Os08t0364900-00	Rice	plastid	42.81	39.77
HORVU5Hr1G120810.1	Barley	plastid	28.13	36.95
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	44.65	36.68
Zm00001d032363_P001	Maize	cytosol	40.37	35.2
EES14882	Sorghum	cytosol, plastid	40.06	34.66

Protein Annotations

EnsemblPlants:Solyc12g014590.1.1	EnsemblPlantsGene:Solyc12g014590.1	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	UniParc:UPI000276A96B	UniProt:K4DCZ4
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:5578789..5581766

Molecular Weight (calculated)

36932.1 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.313

Length

327 amino acids

Sequence
(BLAST)

001: MPPRSIVKKF LARPQHEGFG AIVRRSIGRF ELRYFDPFLV LDEFSVSAPA GFPDHPHRGF ETVTYMLQGA VTHEDFEGHK GTIKAGDLQW MTAGRGIVHS
101: EMPAAEGTQK GLQLWINLSS KHKIIYLQVN SRFSSFWSFI KVKSRSCLYV NLYFVYDRIQ PRYQEIQSES IAEVTKDGIK VRIIAGESLG AKSAIYTRTP
201: TMYLDFTLKQ GSHLQQPIPK SYNAFVYVLE GEGIFGPNEE SSSIGPHNLL LLSGFGDGLD AWNKSTRPLR FILIGGEPLG EPVAQLGPFV MNTQQEIDQT
301: VEDFDNYTNG FEKAKHWRSQ ARIGLDY

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.