Factsheet for TraesCS4A01G335900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G336100.1	Wheat	nucleus	83.33	83.33
HORVU5Hr1G120790.2	Barley	cytosol	82.65	73.86
TraesCS5D01G533100.1	Wheat	plastid	87.42	68.17
TraesCS5B01G535800.1	Wheat	plastid	86.05	68.01
TraesCS4A01G336000.2	Wheat	nucleus	75.51	67.07
TraesCS4A01G336200.2	Wheat	plastid	84.01	66.76
HORVU5Hr1G120780.3	Barley	plastid	84.35	64.58
Os03t0845000-01	Rice	plasma membrane	78.57	63.99
GSMUA_Achr3P02460_001	Banana	cytosol	63.61	63.39
Solyc09g098160.2.1	Tomato	mitochondrion	62.59	63.23
PGSC0003DMT400031088	Potato	cytosol	63.61	63.18
Zm00001d008595_P001	Maize	plastid	71.09	63.14
GSMUA_Achr9P01680_001	Banana	cytosol	63.61	62.96
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	62.93	62.93
GSMUA_Achr10P...	Banana	cytosol	63.61	62.75
PGSC0003DMT400031070	Potato	mitochondrion	60.2	61.46
OQU90634	Sorghum	mitochondrion	72.45	59.66
VIT_05s0094g00610.t01	Wine grape	cytosol	21.77	59.26
VIT_19s0090g01530.t01	Wine grape	cytosol	58.5	57.72
KRG98621	Soybean	nucleus	44.56	57.71
Solyc09g098180.2.1	Tomato	plastid	64.29	57.27
PGSC0003DMT400033425	Potato	mitochondrion	55.78	55.97
KRH01821	Soybean	plastid	61.56	55.86
Zm00001d034829_P001	Maize	mitochondrion	71.77	55.67
KRH46866	Soybean	plastid	60.88	55.08
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	56.12	54.82
KRH14295	Soybean	cytosol	56.12	54.82
KRH46283	Soybean	mitochondrion	55.1	54.36
CDY55513	Canola	plastid	54.42	54.05
Bra004746.1-P	Field mustard	plastid	54.42	54.05
Bra000289.1-P	Field mustard	cytosol	53.74	53.56
AT3G59220.1	Thale cress	cytosol	51.02	52.26
CDY17946	Canola	mitochondrion	55.44	51.26
TraesCS5A01G262700.1	Wheat	mitochondrion	54.42	50.96
CDX83501	Canola	mitochondrion	54.76	50.31
CDY17721	Canola	mitochondrion	33.33	50.0
CDY22806	Canola	cytosol	52.72	49.84
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	52.38	49.68
CDY42802	Canola	mitochondrion	54.08	49.53
CDY37125	Canola	cytosol	52.38	49.52
Bra018859.1-P	Field mustard	cytosol	52.38	49.52
AT3G59260.1	Thale cress	cytosol	45.58	49.45
CDX67787	Canola	nucleus	45.58	49.45
Solyc12g014590.1.1	Tomato	mitochondrion	54.76	49.24
CDX98356	Canola	cytosol	43.2	48.11
Bra007437.1-P	Field mustard	cytosol	31.97	47.96
CDY06015	Canola	cytosol	45.92	47.54
Bra003367.1-P	Field mustard	cytosol	30.61	47.12
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	15.99	47.0
CDX89016	Canola	nucleus	46.26	46.9
Bra014547.1-P	Field mustard	nucleus	45.92	46.55
CDY57498	Canola	cytosol	43.88	46.4
CDY06016	Canola	cytosol	41.84	46.07
CDY00611	Canola	nucleus	45.24	46.02
Bra007438.1-P	Field mustard	cytosol	28.91	45.95
CDY57499	Canola	cytoskeleton, cytosol, nucleus	47.96	45.63
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	30.27	44.28
AT2G43120.2	Thale cress	nucleus	55.1	43.55
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	14.63	43.43
Solyc07g065160.2.1	Tomato	mitochondrion	43.54	42.95
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	43.2	42.62
TraesCS1A01G391900.1	Wheat	plastid	50.0	40.61
VIT_09s0096g00380.t01	Wine grape	nucleus	10.88	22.86

Protein Annotations

EnsemblPlants:TraesCS4A01G335900.1	EnsemblPlantsGene:TraesCS4A01G335900	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr4A:-:618411430..618413166

Molecular Weight (calculated)

32332.6 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.320

Length

294 amino acids

Sequence
(BLAST)

001: MSSSSSSVSF QTPRKVVKKV LSLSQSEADG ATVRRSIGRH EVPNLDPFLL LDEFSVSKSE MECSASSISC SVPFCLHHGA FTHQDFSGRK GTIRTGDVQW
101: MTAGRGIVHS EMPASDGVQK GLQLWINLAS KDKMIKPRYQ ELESKDISQA EKDGVKVRII AGEAFGVRSP VYTRTPTMYM DFTMQPGSQL HQPIPKGWNA
201: FVYIIKGEGV FGREAAASAS AHHCLVLGTG DGLSVWNRSG ARLRFMLAAG QPLNELVVQQ GPFVMNSRAQ IQKAMEDYYY GRNGFEKASQ WSST

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.