CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004746.1-P	Field mustard	plastid	98.65	98.65
CDY17946	Canola	mitochondrion	96.96	90.25
CDY42802	Canola	mitochondrion	95.27	87.85
CDX83501	Canola	mitochondrion	94.59	87.5
CDY17721	Canola	mitochondrion	55.74	84.18
AT2G43120.2	Thale cress	nucleus	92.57	73.66
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	71.62	72.11
VIT_05s0094g00610.t01	Wine grape	cytosol	26.01	71.3
PGSC0003DMT400031088	Potato	cytosol	68.92	68.92
CDX67787	Canola	nucleus	61.49	67.16
KRH01821	Soybean	plastid	72.3	66.05
PGSC0003DMT400031070	Potato	mitochondrion	63.85	65.62
KRH46866	Soybean	plastid	71.96	65.54
Solyc09g098160.2.1	Tomato	mitochondrion	64.19	65.29
GSMUA_Achr10P...	Banana	cytosol	65.54	65.1
GSMUA_Achr9P01680_001	Banana	cytosol	65.2	64.98
CDX89016	Canola	nucleus	63.51	64.83
CDY00611	Canola	nucleus	63.18	64.71
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	28.38	64.62
CDX98356	Canola	cytosol	57.43	64.39
CDY06015	Canola	cytosol	61.15	63.73
GSMUA_Achr3P02460_001	Banana	cytosol	63.51	63.73
TraesCS5B01G535900.1	Wheat	plastid	63.18	63.61
CDY06016	Canola	cytosol	57.09	63.3
CDY57498	Canola	cytosol	58.78	62.59
GSMUA_Achr3P11020_001	Banana	cytosol	63.51	62.46
TraesCS4A01G336100.1	Wheat	nucleus	61.49	61.9
TraesCS5D01G533400.1	Wheat	cytosol	61.49	61.9
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.81	61.86
CDY57499	Canola	cytoskeleton, cytosol, nucleus	64.53	61.81
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	20.61	61.0
Solyc09g098180.2.1	Tomato	plastid	67.91	60.91
Os09t0484800-01	Rice	cytosol, mitochondrion	60.47	60.27
EER96962	Sorghum	cytosol	59.8	60.2
TraesCS5D01G533500.1	Wheat	plastid	60.81	59.8
TraesCS5B01G261100.1	Wheat	mitochondrion	60.47	58.69
Zm00001d020915_P002	Maize	cytosol	58.11	58.11
TraesCS5D01G270300.1	Wheat	cytosol	59.46	58.09
HORVU5Hr1G072760.2	Barley	mitochondrion	59.12	57.76
TraesCS5A01G262700.1	Wheat	mitochondrion	59.8	56.37
HORVU5Hr1G120790.2	Barley	cytosol	62.5	56.23
Zm00001d008595_P001	Maize	plastid	61.15	54.68
TraesCS4A01G335900.1	Wheat	plastid	54.05	54.42
CDY22806	Canola	cytosol	57.09	54.34
CDY37125	Canola	cytosol	57.09	54.34
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.57	52.53
OQU90634	Sorghum	mitochondrion	62.84	52.1
Os03t0845000-01	Rice	plasma membrane	63.18	51.8
TraesCS4A01G336000.2	Wheat	nucleus	55.07	49.24
TraesCS5B01G536000.2	Wheat	plastid	61.15	48.92
TraesCS4A01G336200.2	Wheat	plastid	61.15	48.92
TraesCS5D01G533100.1	Wheat	plastid	61.49	48.28
TraesCS5B01G535700.3	Wheat	plastid	60.14	48.24
TraesCS5B01G535800.1	Wheat	plastid	60.47	48.12
Zm00001d034829_P001	Maize	mitochondrion	61.49	48.02
HORVU5Hr1G120780.3	Barley	plastid	62.16	47.92
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	29.73	43.78
Os08t0364900-00	Rice	plastid	51.69	43.47
TraesCS1B01G420000.1	Wheat	plastid	51.69	42.5
TraesCS1A01G391900.1	Wheat	plastid	51.01	41.71
TraesCS1D01G400000.1	Wheat	plastid	50.34	41.39
HORVU5Hr1G120800.4	Barley	plastid	61.49	40.99
EES14882	Sorghum	cytosol, plastid	47.64	37.3
Zm00001d032363_P001	Maize	cytosol	46.96	37.07
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	49.66	36.93
HORVU5Hr1G120810.1	Barley	plastid	30.07	35.74
VIT_09s0096g00380.t01	Wine grape	nucleus	13.18	27.86

Protein Annotations

EnsemblPlants:CDY55513	EnsemblPlantsGene:GSBRNA2T00016987001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDY55513	ProteinID:CDY55513.1	SEG:seg	SUPFAM:SSF51182
UniParc:UPI0004EE51D5	UniProt:A0A078IYM8	MapMan:35.1	:	:	:

Description

BnaA05g34480DBnaA05g34480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYM8]

Coordinates

chrLK033410:+:58930..60651

Molecular Weight (calculated)

32778.7 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.364

Length

296 amino acids

Sequence
(BLAST)

001: MSSSSSQNFV SRSVIKKVFA KLQKEGDGAV VRRGISRSEQ KLLDPFLMLD EFSVSPPAGF PDHPHRGFET VTYVLEGGIT HQDFKGHKGT IYAGDVQWMT
101: AGRGIIHSEM PEEEINKGLQ LWINLSSNEK MIEPNYQELS SSDIPKAEQN GVQVKIIAGE SMGIQSPVYT RTPTMFLDFI LDPGAQFHQN VPESWNAFAY
201: VLESGEGGAV FGSSNASPVS SHNVVVFEQG NDGVSVWNKS SSKKLRFVLI AGEPLGEPVV QYGPFVMNTQ AEIDMTIEDY HYGKNGFEMA KYWRSQ

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.