Factsheet for TraesCS1B01G420000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G400000.1	Wheat	plastid	89.72	89.72
TraesCS1A01G391900.1	Wheat	plastid	84.72	84.25
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	83.06	75.13
Os08t0364900-00	Rice	plastid	65.0	66.48
VIT_05s0094g00610.t01	Wine grape	cytosol	18.06	60.19
Zm00001d032363_P001	Maize	cytosol	59.44	57.07
TraesCS5B01G535900.1	Wheat	plastid	46.39	56.8
EES14882	Sorghum	cytosol, plastid	58.89	56.08
Solyc09g098160.2.1	Tomato	mitochondrion	44.44	54.98
PGSC0003DMT400031088	Potato	cytosol	45.0	54.73
PGSC0003DMT400031070	Potato	mitochondrion	43.33	54.17
Bra000289.1-P	Field mustard	cytosol	43.33	52.88
TraesCS5B01G261100.1	Wheat	mitochondrion	44.72	52.79
VIT_19s0090g01530.t01	Wine grape	cytosol	43.61	52.68
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	42.78	52.38
Bra004746.1-P	Field mustard	plastid	43.06	52.36
PGSC0003DMT400033425	Potato	mitochondrion	42.22	51.88
CDY55513	Canola	plastid	42.5	51.69
KRH46283	Soybean	mitochondrion	42.5	51.34
CDX67787	Canola	nucleus	38.61	51.29
KRG98621	Soybean	nucleus	32.22	51.1
CDY17721	Canola	mitochondrion	27.78	51.02
AT3G59220.1	Thale cress	cytosol	40.28	50.52
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	42.22	50.5
KRH14295	Soybean	cytosol	41.94	50.17
Solyc09g098180.2.1	Tomato	plastid	45.28	49.39
CDX83501	Canola	mitochondrion	43.89	49.38
CDY17946	Canola	mitochondrion	43.61	49.37
CDY42802	Canola	mitochondrion	43.61	48.91
CDX98356	Canola	cytosol	35.83	48.86
AT3G59260.1	Thale cress	cytosol	36.67	48.71
CDY06015	Canola	cytosol	38.33	48.59
CDY57498	Canola	cytosol	36.94	47.84
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	41.11	47.74
KRH01821	Soybean	plastid	42.78	47.53
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	13.06	47.0
KRH46866	Soybean	plastid	42.22	46.77
CDY37125	Canola	cytosol	40.28	46.62
CDY22806	Canola	cytosol	40.28	46.62
Bra018859.1-P	Field mustard	cytosol	40.0	46.3
CDY06016	Canola	cytosol	34.17	46.07
Solyc12g014590.1.1	Tomato	mitochondrion	41.67	45.87
CDX89016	Canola	nucleus	36.94	45.86
TraesCS5B01G535800.1	Wheat	plastid	47.22	45.7
TraesCS5B01G536000.2	Wheat	plastid	46.94	45.68
CDY00611	Canola	nucleus	36.67	45.67
Bra014547.1-P	Field mustard	nucleus	36.67	45.52
CDY57499	Canola	cytoskeleton, cytosol, nucleus	38.89	45.31
TraesCS5B01G535700.3	Wheat	plastid	46.11	44.99
Bra007437.1-P	Field mustard	cytosol	23.89	43.88
Bra003367.1-P	Field mustard	cytosol	22.78	42.93
Bra007438.1-P	Field mustard	cytosol	21.94	42.7
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	35.28	42.62
Solyc07g065160.2.1	Tomato	mitochondrion	35.0	42.28
AT2G43120.2	Thale cress	nucleus	43.61	42.2
VIT_09s0096g00380.t01	Wine grape	nucleus	7.5	19.29

Protein Annotations

EnsemblPlants:TraesCS1B01G420000.1	EnsemblPlantsGene:TraesCS1B01G420000	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF11	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:+:643174406..643177901

Molecular Weight (calculated)

38483.0 Da

IEP (calculated)

4.873

GRAVY (calculated)

-0.361

Length

360 amino acids

Sequence
(BLAST)

001: MSAAACVPFC PSPASSRHGA GPIVDVAGLP PATEAEEHGA GRDLLEFGVN GVIGANSDSD DAAAAEIDDE EEHSVRRPRA VVQKFMCERK AVGDGFALRR
101: SIGRPELQSL DPFISLDEFE FSRPAGFTDH PHRGFENVTY MLEGGLSYHD FSGHKGTINT GDVQWMTAGR GVVHAEMPGG EGVQRGLNLW LNLSSKDKMV
201: APRYQELRSR DIPTAEKDGV SVKVIAGEAL GARSPIQTRT PAMWLDVTMR PGARLRQPVP AGWSACAYVL DGEASFGQPG DEAAGAHHCV VFGNDGDGVD
301: VRSEGAGARF LLLAARPHGE AVALDGPFVM NTSEEVQQAR EDYLNRRNGF EMAAGWTSGQ

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.