Factsheet for TraesCS1D01G400000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G420000.1	Wheat	plastid	89.72	89.72
TraesCS1A01G391900.1	Wheat	plastid	86.94	86.46
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	82.5	74.62
Os08t0364900-00	Rice	plastid	63.89	65.34
VIT_05s0094g00610.t01	Wine grape	cytosol	17.5	58.33
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.28	56.01
Zm00001d032363_P001	Maize	cytosol	58.33	56.0
TraesCS5D01G533400.1	Wheat	cytosol	45.28	55.44
EES14882	Sorghum	cytosol, plastid	57.22	54.5
TraesCS5D01G533500.1	Wheat	plastid	45.56	54.49
Solyc09g098160.2.1	Tomato	mitochondrion	43.33	53.61
PGSC0003DMT400031088	Potato	cytosol	43.89	53.38
PGSC0003DMT400031070	Potato	mitochondrion	42.22	52.78
VIT_19s0090g01530.t01	Wine grape	cytosol	42.78	51.68
Bra000289.1-P	Field mustard	cytosol	42.22	51.53
TraesCS5D01G270300.1	Wheat	cytosol	43.33	51.49
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	41.94	51.36
Bra004746.1-P	Field mustard	plastid	41.94	51.01
PGSC0003DMT400033425	Potato	mitochondrion	41.39	50.85
CDX67787	Canola	nucleus	38.06	50.55
CDY55513	Canola	plastid	41.39	50.34
KRH46283	Soybean	mitochondrion	41.67	50.34
AT3G59220.1	Thale cress	cytosol	40.0	50.17
KRG98621	Soybean	nucleus	31.39	49.78
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	41.39	49.5
CDY17721	Canola	mitochondrion	26.94	49.49
KRH14295	Soybean	cytosol	41.11	49.17
Solyc09g098180.2.1	Tomato	plastid	44.17	48.18
CDX83501	Canola	mitochondrion	42.78	48.12
CDY17946	Canola	mitochondrion	42.5	48.11
CDX98356	Canola	cytosol	35.28	48.11
CDY42802	Canola	mitochondrion	42.5	47.66
AT3G59260.1	Thale cress	cytosol	35.83	47.6
CDY06015	Canola	cytosol	37.5	47.54
KRH01821	Soybean	plastid	42.5	47.22
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	13.06	47.0
CDY57498	Canola	cytosol	36.11	46.76
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	40.0	46.45
KRH46866	Soybean	plastid	41.11	45.54
CDY22806	Canola	cytosol	38.89	45.02
CDY37125	Canola	cytosol	38.89	45.02
Solyc12g014590.1.1	Tomato	mitochondrion	40.83	44.95
TraesCS5D01G533100.1	Wheat	plastid	46.94	44.83
Bra018859.1-P	Field mustard	cytosol	38.61	44.69
CDY06016	Canola	cytosol	33.06	44.57
CDX89016	Canola	nucleus	35.83	44.48
CDY00611	Canola	nucleus	35.56	44.29
Bra014547.1-P	Field mustard	nucleus	35.56	44.14
CDY57499	Canola	cytoskeleton, cytosol, nucleus	37.78	44.01
Bra003367.1-P	Field mustard	cytosol	22.22	41.88
Bra007437.1-P	Field mustard	cytosol	22.5	41.33
AT2G43120.2	Thale cress	nucleus	42.5	41.13
Bra007438.1-P	Field mustard	cytosol	21.11	41.08
Solyc07g065160.2.1	Tomato	mitochondrion	33.89	40.94
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	33.89	40.94
VIT_09s0096g00380.t01	Wine grape	nucleus	7.78	20.0

Protein Annotations

EnsemblPlants:TraesCS1D01G400000.1	EnsemblPlantsGene:TraesCS1D01G400000	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF11	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr1D:+:466425917..466429840

Molecular Weight (calculated)

38540.9 Da

IEP (calculated)

4.749

GRAVY (calculated)

-0.394

Length

360 amino acids

Sequence
(BLAST)

001: MSAAACVSFC PSPASSRHGG PIVDLAGLPP ATEAEERGAQ RDLLEFGVNG TIGANSDSDE DAAAAEIDDE EEHSVRRPRA VVQKFMCERK AVGDGFALRR
101: SIGRPELQSL DPFISLDEFE FSRPAGFSDH PHRGFENVTY MLEGGLSYHD FSGHKGTINT GDVQWMTAGR GVVHAEMPGG EGVQRGLNLW LNLSSTDKMV
201: APRYQELRSR DVPTAEKDGA SIKVIAGEAL GARSPIQTRT PAMWLDVTMR PGARLRQPVP AGWSACAYVI DGEASFGQPG DEAAGAHHCV VFGGDGDGVD
301: VRSEGAGTRF LLLAARPHGE AVALDGPFVM NTSEEVQQAR EDYLNRRNGF EMAAGWTSGQ

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.