Factsheet for PGSC0003DMT400033425

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014590.1.1	Tomato	mitochondrion	96.25	86.24
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	36.18	81.54
VIT_19s0090g01530.t01	Wine grape	cytosol	78.84	77.52
KRH14295	Soybean	cytosol	78.84	76.74
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	78.5	76.41
GSMUA_Achr3P11020_001	Banana	cytosol	75.77	73.75
KRH46283	Soybean	mitochondrion	74.74	73.49
KRG98621	Soybean	nucleus	55.63	71.81
EER96962	Sorghum	cytosol	70.99	70.75
Os09t0484800-01	Rice	cytosol, mitochondrion	71.67	70.71
TraesCS5B01G261100.1	Wheat	mitochondrion	73.04	70.16
Zm00001d020915_P002	Maize	cytosol	70.31	69.59
TraesCS5D01G270300.1	Wheat	cytosol	71.67	69.31
HORVU5Hr1G072760.2	Barley	mitochondrion	71.33	68.98
TraesCS5A01G262700.1	Wheat	mitochondrion	72.01	67.2
GSMUA_Achr3P02460_001	Banana	cytosol	67.58	67.12
CDY22806	Canola	cytosol	70.31	66.24
CDY37125	Canola	cytosol	69.97	65.92
Bra018859.1-P	Field mustard	cytosol	69.97	65.92
PGSC0003DMT400031088	Potato	cytosol	65.87	65.2
GSMUA_Achr9P01680_001	Banana	cytosol	65.53	64.65
PGSC0003DMT400031070	Potato	mitochondrion	63.48	64.58
GSMUA_Achr10P...	Banana	cytosol	65.19	64.09
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	67.58	63.87
TraesCS4A01G336100.1	Wheat	nucleus	63.14	62.93
TraesCS5B01G535900.1	Wheat	plastid	63.14	62.93
TraesCS5D01G533400.1	Wheat	cytosol	62.46	62.24
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.75	61.17
TraesCS5D01G533500.1	Wheat	plastid	62.12	60.47
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	61.43	60.4
TraesCS4A01G335900.1	Wheat	plastid	55.97	55.78
HORVU5Hr1G120790.2	Barley	cytosol	61.77	55.02
Zm00001d008595_P001	Maize	plastid	61.43	54.38
Os03t0845000-01	Rice	plasma membrane	66.21	53.74
OQU90634	Sorghum	mitochondrion	64.16	52.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.41	51.52
TraesCS4A01G336000.2	Wheat	nucleus	55.97	49.55
TraesCS5B01G536000.2	Wheat	plastid	62.46	49.46
TraesCS5B01G535800.1	Wheat	plastid	62.46	49.19
TraesCS4A01G336200.2	Wheat	plastid	62.12	49.19
Zm00001d034829_P001	Maize	mitochondrion	62.8	48.55
TraesCS5B01G535700.3	Wheat	plastid	61.09	48.51
TraesCS5D01G533100.1	Wheat	plastid	61.43	47.75
HORVU5Hr1G120780.3	Barley	plastid	60.75	46.35
TraesCS1B01G420000.1	Wheat	plastid	51.88	42.22
HORVU5Hr1G120800.4	Barley	plastid	63.14	41.67
TraesCS1A01G391900.1	Wheat	plastid	51.19	41.44
TraesCS1D01G400000.1	Wheat	plastid	50.85	41.39
Os08t0364900-00	Rice	plastid	49.15	40.91
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	27.99	40.8
HORVU5Hr1G120810.1	Barley	plastid	31.74	37.35
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	50.51	37.19
Zm00001d032363_P001	Maize	cytosol	46.76	36.53
EES14882	Sorghum	cytosol, plastid	46.42	35.98

Protein Annotations

EntrezGene:102592768	Gene3D:2.60.120.10	MapMan:35.1	InterPro:IPR014710	UniProt:M1AZ45	PFAM:PF02678
PFAM:PF05726	EnsemblPlantsGene:PGSC0003DMG400012844	PGSC:PGSC0003DMG400012844	EnsemblPlants:PGSC0003DMT400033425	PIRSF:PIRSF006232	PANTHER:PTHR13903
PANTHER:PTHR13903:SF5	InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SUPFAM:SSF51182	UniParc:UPI0002949396	RefSeq:XP_006344881.2	SEG:seg	:	:

Description

Pirin [Source:PGSC_GENE;Acc:PGSC0003DMG400012844]

Coordinates

chr12:-:9584515..9587850

Molecular Weight (calculated)

32600.8 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.384

Length

293 amino acids

Sequence
(BLAST)

001: MPPRSIVKKF LARPQHEGFG AVVRRSIGRF ELRYFDPFLV LDEFSVSAPA GFPDHPHRGF ETVTYMLQGA VTHEDFEGHK GTIKAGDLQW MTAGRGIVHS
101: EMPAAEGTQK GLQLWINLSS KHKMIQPRYQ EIPSENIAEA TKDGIKVRII AGESLGAKSA IYTRTPTMYL DFTLKQGSHL QQPIPKSYNA FVYVLEGEGI
201: FGPHEESSSI GAHNLLLLSG SGDGLEAWNK STKPLRFILV GGEPLGEPVA QLGPFVMNTQ QEIDQTVEDF DNYTNGFEKA KHWRSQARIG LDY

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.