Factsheet for TraesCS4A01G336000.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	74.62	84.88
TraesCS4A01G336100.1	Wheat	nucleus	75.23	84.69
TraesCS4A01G335900.1	Wheat	plastid	67.07	75.51
HORVU5Hr1G120790.2	Barley	cytosol	73.41	73.86
TraesCS5B01G535700.3	Wheat	plastid	75.23	67.48
TraesCS4A01G336200.2	Wheat	plastid	74.02	66.22
GSMUA_Achr3P02460_001	Banana	cytosol	57.4	64.41
GSMUA_Achr9P01680_001	Banana	cytosol	57.7	64.31
PGSC0003DMT400031088	Potato	cytosol	57.4	64.19
Solyc09g098160.2.1	Tomato	mitochondrion	55.89	63.57
GSMUA_Achr10P...	Banana	cytosol	56.8	63.09
Os03t0845000-01	Rice	plasma membrane	68.58	62.88
HORVU5Hr1G120780.3	Barley	plastid	72.81	62.76
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	55.29	62.24
PGSC0003DMT400031070	Potato	mitochondrion	53.78	61.81
Zm00001d008595_P001	Maize	plastid	61.63	61.63
VIT_19s0090g01530.t01	Wine grape	cytosol	53.17	59.06
OQU90634	Sorghum	mitochondrion	62.84	58.26
Solyc09g098180.2.1	Tomato	plastid	57.7	57.88
VIT_05s0094g00610.t01	Wine grape	cytosol	18.73	57.41
KRH46283	Soybean	mitochondrion	51.06	56.71
KRH14295	Soybean	cytosol	51.36	56.48
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	51.06	56.15
PGSC0003DMT400033425	Potato	mitochondrion	49.55	55.97
KRH01821	Soybean	plastid	54.68	55.86
KRH46866	Soybean	plastid	54.68	55.69
CDY55513	Canola	plastid	49.24	55.07
Bra004746.1-P	Field mustard	plastid	48.94	54.73
Bra000289.1-P	Field mustard	cytosol	48.64	54.58
Zm00001d034829_P001	Maize	mitochondrion	62.24	54.35
AT3G59220.1	Thale cress	cytosol	46.53	53.66
KRG98621	Soybean	nucleus	36.25	52.86
TraesCS5A01G262700.1	Wheat	mitochondrion	49.55	52.23
CDY17946	Canola	mitochondrion	49.55	51.57
CDX83501	Canola	mitochondrion	49.85	51.56
CDY17721	Canola	mitochondrion	30.51	51.53
CDY22806	Canola	cytosol	48.04	51.13
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	15.41	51.0
CDY37125	Canola	cytosol	47.73	50.8
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	47.43	50.65
Bra018859.1-P	Field mustard	cytosol	47.43	50.48
CDY42802	Canola	mitochondrion	48.94	50.47
Solyc12g014590.1.1	Tomato	mitochondrion	48.94	49.54
AT3G59260.1	Thale cress	cytosol	40.18	49.08
CDY06016	Canola	cytosol	39.27	48.69
CDY57498	Canola	cytosol	40.18	47.84
CDX67787	Canola	nucleus	38.97	47.6
CDX89016	Canola	nucleus	41.69	47.59
CDY06015	Canola	cytosol	40.79	47.54
Bra007437.1-P	Field mustard	cytosol	28.1	47.45
Bra014547.1-P	Field mustard	nucleus	41.39	47.24
CDX98356	Canola	cytosol	37.46	46.97
CDY00611	Canola	nucleus	40.48	46.37
Bra003367.1-P	Field mustard	cytosol	26.59	46.07
CDY57499	Canola	cytoskeleton, cytosol, nucleus	41.69	44.66
AT2G43120.2	Thale cress	nucleus	50.15	44.62
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	13.29	44.44
Bra007438.1-P	Field mustard	cytosol	24.77	44.32
Solyc07g065160.2.1	Tomato	mitochondrion	39.27	43.62
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	38.97	43.29
TraesCS1A01G391900.1	Wheat	plastid	43.81	40.06
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	23.57	38.81
VIT_09s0096g00380.t01	Wine grape	nucleus	11.48	27.14

Protein Annotations

EnsemblPlants:TraesCS4A01G336000.2	EnsemblPlantsGene:TraesCS4A01G336000	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr4A:-:618417732..618419090

Molecular Weight (calculated)

36364.6 Da

IEP (calculated)

8.373

GRAVY (calculated)

-0.208

Length

331 amino acids

Sequence
(BLAST)

001: MSSSSTPVTF ENPRKVVKKV LSLSQSEGDG ATVRRSIGGC ELRNLDPFLL LDEFSVSKPA GFPDHPHRGF ETVTYMLDVR THALSFFHVF SQIYSASIVL
101: PARCLLKCCS VFYVLTMHAG GLHPPGLLGA QGHHQDRRCP GRGIVHSEMP AADGVQKGLQ LWINLASKDK MIEPRYQELK SKDISQAEKH GVKVRIIAGE
201: AFGVQSPVYT RTPTMYMDFT MQPGSQLHQP IPEGWNAFVY IIEGEGVFGG EGDAPASTHH CLVLGAGNGL SVWKRSGAQL RFVLAAGQPL NEPVVQQGLF
301: VMNSRAQIQQ AMQDYYYGRN GFEKASQWSS A

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.