CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92877
KRH33913

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	KRG92877	AT1G09030.1	17322342
AT3G59220.1	KRH33913	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46866	Soybean	plastid	87.96	87.69
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	74.07	81.63
VIT_05s0094g00610.t01	Wine grape	cytosol	24.69	74.07
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	22.84	74.0
PGSC0003DMT400031088	Potato	cytosol	67.59	73.99
Bra004746.1-P	Field mustard	plastid	66.36	72.64
GSMUA_Achr9P01680_001	Banana	cytosol	66.36	72.39
CDY55513	Canola	plastid	66.05	72.3
Solyc09g098160.2.1	Tomato	mitochondrion	64.51	71.82
GSMUA_Achr10P...	Banana	cytosol	66.05	71.81
Bra000289.1-P	Field mustard	cytosol	65.12	71.53
PGSC0003DMT400031070	Potato	mitochondrion	63.27	71.18
TraesCS4A01G336100.1	Wheat	nucleus	63.58	70.07
TraesCS5B01G535900.1	Wheat	plastid	63.58	70.07
TraesCS5D01G533400.1	Wheat	cytosol	62.96	69.39
GSMUA_Achr3P02460_001	Banana	cytosol	62.35	68.47
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	61.42	68.38
CDY17946	Canola	mitochondrion	66.98	68.24
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	27.16	67.69
CDY17721	Canola	mitochondrion	40.74	67.35
CDY42802	Canola	mitochondrion	66.67	67.29
TraesCS5D01G533500.1	Wheat	plastid	62.35	67.11
Solyc09g098180.2.1	Tomato	plastid	67.59	66.36
CDX83501	Canola	mitochondrion	65.43	66.25
GSMUA_Achr3P11020_001	Banana	cytosol	58.64	63.12
AT3G59220.1	Thale cress	cytosol	55.56	62.72
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	57.72	62.13
KRH14295	Soybean	cytosol	57.72	62.13
EER96962	Sorghum	cytosol	56.17	61.9
HORVU5Hr1G120790.2	Barley	cytosol	62.65	61.7
TraesCS4A01G335900.1	Wheat	plastid	55.86	61.56
Zm00001d008595_P001	Maize	plastid	62.65	61.33
KRH46283	Soybean	mitochondrion	56.17	61.07
Os09t0484800-01	Rice	cytosol, mitochondrion	55.56	60.61
AT3G59260.1	Thale cress	cytosol	50.31	60.15
Zm00001d020915_P002	Maize	cytosol	54.63	59.8
CDX67787	Canola	nucleus	50.0	59.78
TraesCS5D01G270300.1	Wheat	cytosol	55.86	59.74
TraesCS5B01G261100.1	Wheat	mitochondrion	56.17	59.67
HORVU5Hr1G072760.2	Barley	mitochondrion	55.25	59.08
CDX98356	Canola	cytosol	47.84	58.71
Os03t0845000-01	Rice	plasma membrane	65.12	58.45
OQU90634	Sorghum	mitochondrion	63.89	57.98
TraesCS5A01G262700.1	Wheat	mitochondrion	56.17	57.96
AT2G43120.2	Thale cress	nucleus	66.36	57.8
CDY06015	Canola	cytosol	50.0	57.04
KRG98621	Soybean	nucleus	39.81	56.83
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.28	56.57
CDX89016	Canola	nucleus	50.62	56.55
CDY57498	Canola	cytosol	47.84	55.76
Bra014547.1-P	Field mustard	nucleus	49.69	55.52
TraesCS4A01G336200.2	Wheat	plastid	62.96	55.14
TraesCS5B01G535700.3	Wheat	plastid	62.65	55.01
TraesCS5B01G536000.2	Wheat	plastid	62.65	54.86
TraesCS4A01G336000.2	Wheat	nucleus	55.86	54.68
CDY06016	Canola	cytosol	45.06	54.68
TraesCS5D01G533100.1	Wheat	plastid	63.58	54.64
TraesCS5B01G535800.1	Wheat	plastid	62.65	54.57
CDY00611	Canola	nucleus	48.46	54.33
HORVU5Hr1G120780.3	Barley	plastid	63.89	53.91
CDY57499	Canola	cytoskeleton, cytosol, nucleus	51.23	53.72
Zm00001d034829_P001	Maize	mitochondrion	62.35	53.3
Bra003367.1-P	Field mustard	cytosol	31.17	52.88
Bra007437.1-P	Field mustard	cytosol	31.79	52.55
Bra007438.1-P	Field mustard	cytosol	28.7	50.27
HORVU5Hr1G120800.4	Barley	plastid	63.27	46.17
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	27.78	44.78
Os08t0364900-00	Rice	plastid	47.22	43.47
TraesCS1B01G420000.1	Wheat	plastid	47.53	42.78
TraesCS1D01G400000.1	Wheat	plastid	47.22	42.5
TraesCS1A01G391900.1	Wheat	plastid	46.91	41.99
HORVU5Hr1G120810.1	Barley	plastid	31.17	40.56
EES14882	Sorghum	cytosol, plastid	43.21	37.04
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	44.75	36.43
Zm00001d032363_P001	Maize	cytosol	41.98	36.27
VIT_09s0096g00380.t01	Wine grape	nucleus	15.12	35.0

Protein Annotations

EMBL:ACUP02011534	EnsemblPlants:KRH01821	EnsemblPlantsGene:GLYMA_18G300500	EntrezGene:100775597	Gene3D:2.60.120.10	InterPro:IPR014710
InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903
PANTHER:PTHR13903:SF5	PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:KRH01821	ProteinID:KRH01821.1
SUPFAM:SSF51182	UniParc:UPI000233F422	UniProt:I1N5F6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr18:+:57841316..57843280

Molecular Weight (calculated)

36411.6 Da

IEP (calculated)

7.275

GRAVY (calculated)

-0.360

Length

324 amino acids

Sequence
(BLAST)

001: MRAISHHLLV SLLDWRISTS RSLFSLRTIM SQSDHSSAFT TPRLVLKKVL AKSQHEGDGA VVRRGIGRSE LKNLDPFLML DHFSVSPPAG FPDHPHRGFE
101: TVTYMLEGGI THQDFAGHKG TIRKGDVQWM TAGRGIIHSE MPAEANNNKG LQLWINLSSR DKMMEPNYQE LPSENIPRAE KDGVEVRVIA GEAMGVHSPV
201: YTRTPTMYLV FCMMPGTQWH QRIPESWNAF VYTIEGEGVF GCPSSSPTVA HHVLVLSQGD GLSVWNNSSK PLRFVLIGGQ PLNEPVVQYG PFVMNTQSEI
301: EKTIEDYHYG RNGFEMSKYW MSQQ

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.