Factsheet for TraesCS5B01G535800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G535900.1	Wheat	plastid	72.85	92.18
TraesCS5D01G533100.1	Wheat	plastid	88.98	87.8
TraesCS4A01G335900.1	Wheat	plastid	68.01	86.05
TraesCS5B01G536000.2	Wheat	plastid	84.14	84.59
HORVU5Hr1G120790.2	Barley	cytosol	71.51	80.85
TraesCS5B01G535700.3	Wheat	plastid	77.15	77.78
HORVU5Hr1G120780.3	Barley	plastid	76.34	73.96
VIT_05s0094g00610.t01	Wine grape	cytosol	20.97	72.22
PGSC0003DMT400031088	Potato	cytosol	56.72	71.28
GSMUA_Achr3P02460_001	Banana	cytosol	56.45	71.19
GSMUA_Achr9P01680_001	Banana	cytosol	56.18	70.37
Solyc09g098160.2.1	Tomato	mitochondrion	54.84	70.1
Zm00001d008595_P001	Maize	plastid	62.37	70.09
Os03t0845000-01	Rice	plasma membrane	68.01	70.08
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	55.38	70.07
GSMUA_Achr10P...	Banana	cytosol	55.38	69.13
PGSC0003DMT400031070	Potato	mitochondrion	52.96	68.4
OQU90634	Sorghum	mitochondrion	64.78	67.51
Solyc09g098180.2.1	Tomato	plastid	57.53	64.85
Zm00001d034829_P001	Maize	mitochondrion	65.86	64.64
VIT_19s0090g01530.t01	Wine grape	cytosol	51.61	64.43
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	16.94	63.0
KRH01821	Soybean	plastid	54.57	62.65
PGSC0003DMT400033425	Potato	mitochondrion	49.19	62.46
KRH46866	Soybean	plastid	54.3	62.15
KRH14295	Soybean	cytosol	49.73	61.46
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	49.46	61.13
KRH46283	Soybean	mitochondrion	48.66	60.74
Bra004746.1-P	Field mustard	plastid	48.12	60.47
CDY55513	Canola	plastid	48.12	60.47
CDY17721	Canola	mitochondrion	31.45	59.69
TraesCS5B01G261100.1	Wheat	mitochondrion	48.92	59.67
Bra000289.1-P	Field mustard	cytosol	47.31	59.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	15.86	59.6
KRG98621	Soybean	nucleus	35.75	58.59
CDY17946	Canola	mitochondrion	49.19	57.55
AT3G59220.1	Thale cress	cytosol	44.35	57.49
CDX83501	Canola	mitochondrion	49.19	57.19
CDY42802	Canola	mitochondrion	48.39	56.07
CDY22806	Canola	cytosol	46.77	55.95
CDY37125	Canola	cytosol	46.51	55.63
Bra018859.1-P	Field mustard	cytosol	46.24	55.31
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	45.97	55.16
Solyc12g014590.1.1	Tomato	mitochondrion	48.39	55.05
AT3G59260.1	Thale cress	cytosol	40.05	54.98
CDX67787	Canola	nucleus	39.25	53.87
CDX98356	Canola	cytosol	37.63	53.03
CDY06015	Canola	cytosol	40.05	52.46
CDY57498	Canola	cytosol	38.98	52.16
CDX89016	Canola	nucleus	40.32	51.72
Bra014547.1-P	Field mustard	nucleus	40.05	51.38
CDY06016	Canola	cytosol	36.83	51.31
CDY00611	Canola	nucleus	38.98	50.17
CDY57499	Canola	cytoskeleton, cytosol, nucleus	41.4	49.84
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.88	49.75
Bra007437.1-P	Field mustard	cytosol	26.08	49.49
AT2G43120.2	Thale cress	nucleus	49.46	49.46
Solyc07g065160.2.1	Tomato	mitochondrion	38.44	47.99
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	38.44	47.99
TraesCS1B01G420000.1	Wheat	plastid	45.7	47.22
Bra003367.1-P	Field mustard	cytosol	24.19	47.12
Bra007438.1-P	Field mustard	cytosol	22.85	45.95
VIT_09s0096g00380.t01	Wine grape	nucleus	11.56	30.71

Protein Annotations

EnsemblPlants:TraesCS5B01G535800.1	EnsemblPlantsGene:TraesCS5B01G535800	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr5B:-:691797228..691798749

Molecular Weight (calculated)

40772.9 Da

IEP (calculated)

10.274

GRAVY (calculated)

-0.229

Length

372 amino acids

Sequence
(BLAST)

001: MIQHLTSPDL TATKMLRQHL PYFNSSRRVP VASRKTSSSS RSSANTRPFL CLALFLLLIL VVAAVFLFPP AIMSSSSSSS SSAAAVPFQS PRKVVKKVLS
101: LSQSEGDGAT VRRSIGRHEL RSLDPFLLLD EFSVSKPGGF PDHPHRGFET VTYMLDGAFT HQDFSGRKGT IRTGDVQWMT AGRGIVHSEM PASDGVQKGL
201: QLWINLASKD KMIKPRYQEL ESKDISQAEK HGVKVRIIAG EAFGVRSPVY TRTPTMYMDF TMQPGSHLHQ PIPEGWNAFV YIIEGEGVFG KEGAAPASAH
301: HCLVLGAGDG LSVWNRSGAP LRFVLAAGQP LNEPVVQQGP FVMNSRAQIQ KAMEDYYHGR NGFKKASQWS ST

Best Arabidopsis Sequence Match ( AT3G59260.1 )
(BLAST)

001: MKVMVLSLGK ASPSKSDHEL LDPFVSLVEF SVSPPGGFKD HPHRGFESVT YMFQGGIIHQ DCNGNKGTIH EGDVQWMTAG RGIIHSEMPE EQVNKGLQLW
101: INLPSSAKMI EPKNIEISSS EIPSADDYGV EVKVIAGESM GVKSPFYTKT PIMFLDFTLD PKAQTHQAVP ESWTAFAYIV EGDEGVFSSS DSSTVQAHNV
201: VVFGTGDEVS VWNTSNSRPL RFLLIAGEPI GEPVVQHGPF VMNSQDEIEM TIGDYRNGMN GFEMAKHWRS E

Arabidopsis Description

Putative pirin-like protein At3g59260 [Source:UniProtKB/Swiss-Prot;Acc:Q9LX45]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.