CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17721	Canola	mitochondrion	60.94	99.49
Bra000289.1-P	Field mustard	cytosol	90.94	98.64
CDY55513	Canola	plastid	87.5	94.59
CDY42802	Canola	mitochondrion	90.31	90.03
CDY17946	Canola	mitochondrion	88.44	88.99
AT2G43120.2	Thale cress	nucleus	85.94	73.92
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	66.56	72.45
VIT_05s0094g00610.t01	Wine grape	cytosol	24.06	71.3
PGSC0003DMT400031088	Potato	cytosol	65.0	70.27
CDX67787	Canola	nucleus	58.44	69.0
CDY00611	Canola	nucleus	60.31	66.78
PGSC0003DMT400031070	Potato	mitochondrion	60.0	66.67
Solyc09g098160.2.1	Tomato	mitochondrion	60.31	66.32
CDX98356	Canola	cytosol	54.69	66.29
CDX89016	Canola	nucleus	59.69	65.86
GSMUA_Achr9P01680_001	Banana	cytosol	60.94	65.66
KRH01821	Soybean	plastid	66.25	65.43
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	26.56	65.38
CDY06015	Canola	cytosol	57.81	65.14
KRH46866	Soybean	plastid	65.62	64.62
GSMUA_Achr10P...	Banana	cytosol	60.0	64.43
CDY06016	Canola	cytosol	53.75	64.42
TraesCS5B01G535900.1	Wheat	plastid	58.75	63.95
CDY57499	Canola	cytoskeleton, cytosol, nucleus	61.56	63.75
CDY57498	Canola	cytosol	55.31	63.67
GSMUA_Achr3P11020_001	Banana	cytosol	59.69	63.46
GSMUA_Achr3P02460_001	Banana	cytosol	58.44	63.39
Os09t0484800-01	Rice	cytosol, mitochondrion	58.44	62.96
Solyc09g098180.2.1	Tomato	plastid	64.69	62.73
EER96962	Sorghum	cytosol	57.5	62.59
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	56.88	62.54
TraesCS5D01G533400.1	Wheat	cytosol	57.19	62.24
TraesCS4A01G336100.1	Wheat	nucleus	57.19	62.24
TraesCS5B01G261100.1	Wheat	mitochondrion	58.12	60.98
Zm00001d020915_P002	Maize	cytosol	55.94	60.47
TraesCS5D01G533500.1	Wheat	plastid	56.88	60.47
TraesCS5D01G270300.1	Wheat	cytosol	57.19	60.4
HORVU5Hr1G072760.2	Barley	mitochondrion	56.88	60.07
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	18.44	59.0
TraesCS5A01G262700.1	Wheat	mitochondrion	57.5	58.6
HORVU5Hr1G120790.2	Barley	cytosol	58.75	57.14
Zm00001d008595_P001	Maize	plastid	58.75	56.8
CDY22806	Canola	cytosol	54.38	55.95
CDY37125	Canola	cytosol	54.38	55.95
TraesCS4A01G335900.1	Wheat	plastid	50.31	54.76
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	16.56	53.54
OQU90634	Sorghum	mitochondrion	59.69	53.5
Os03t0845000-01	Rice	plasma membrane	59.06	52.35
TraesCS4A01G336200.2	Wheat	plastid	57.81	50.0
TraesCS5B01G536000.2	Wheat	plastid	57.81	50.0
TraesCS4A01G336000.2	Wheat	nucleus	51.56	49.85
Zm00001d034829_P001	Maize	mitochondrion	58.75	49.6
TraesCS5B01G535700.3	Wheat	plastid	56.88	49.32
TraesCS5B01G535800.1	Wheat	plastid	57.19	49.19
TraesCS5D01G533100.1	Wheat	plastid	57.81	49.07
HORVU5Hr1G120780.3	Barley	plastid	57.81	48.18
Os08t0364900-00	Rice	plastid	49.06	44.6
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	27.81	44.28
TraesCS1B01G420000.1	Wheat	plastid	49.38	43.89
TraesCS1A01G391900.1	Wheat	plastid	48.75	43.09
TraesCS1D01G400000.1	Wheat	plastid	48.12	42.78
HORVU5Hr1G120800.4	Barley	plastid	57.5	41.44
Zm00001d032363_P001	Maize	cytosol	45.31	38.67
EES14882	Sorghum	cytosol, plastid	45.62	38.62
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	47.81	38.44
HORVU5Hr1G120810.1	Barley	plastid	29.06	37.35
VIT_09s0096g00380.t01	Wine grape	nucleus	11.88	27.14

Protein Annotations

EnsemblPlants:CDX83501	EnsemblPlantsGene:GSBRNA2T00139093001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:CDX83501	ProteinID:CDX83501.1	SEG:seg	SUPFAM:SSF51182
UniParc:UPI0004EEB423	MapMan:35.1	:	:	:	:

Description

BnaA03g20050D

Coordinates

chrLK031832:-:1829130..1830747

Molecular Weight (calculated)

35324.9 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.303

Length

320 amino acids

Sequence
(BLAST)

001: MRAAINKANT LRGLVTFGFI RNITSMSSSS QSFVSRSVIK KVFAKLQSEG DGAVVRRGIS RSEQRLLDPF LMLDEFSVSP PAGFPDHPHR GFETVTYVLE
101: GGITHQDFKG HKGTIYAGDV QWMTAGRGII HSEMPEEEVN KGLQLWINLS SNEKMIEPNY QELSSSDIPK AEQNGVQVKV IAGESMGIQS PVYTRTPTMF
201: LDFTLHPGAQ FHQKVPESWN AFAYVLESGE GGAVFGSSNS SPVSAHNVVV FGQGNDGVSV WNKSSSKKLR FVLIAGEPIG EPVVQYGPFV MNTQAEIDMT
301: IEDYHYSKNG FEMAKYWKSQ

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.