Factsheet for TraesCS1A01G391900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G400000.1	Wheat	plastid	86.46	86.94
TraesCS1B01G420000.1	Wheat	plastid	84.25	84.72
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	81.49	74.12
Os08t0364900-00	Rice	plastid	63.81	65.62
VIT_05s0094g00610.t01	Wine grape	cytosol	17.4	58.33
Zm00001d032363_P001	Maize	cytosol	58.29	56.27
EES14882	Sorghum	cytosol, plastid	58.01	55.56
TraesCS4A01G336100.1	Wheat	nucleus	44.48	54.76
Solyc09g098160.2.1	Tomato	mitochondrion	43.09	53.61
PGSC0003DMT400031088	Potato	cytosol	43.65	53.38
PGSC0003DMT400031070	Potato	mitochondrion	41.99	52.78
Bra000289.1-P	Field mustard	cytosol	42.54	52.2
Bra004746.1-P	Field mustard	plastid	42.27	51.69
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	41.71	51.36
VIT_19s0090g01530.t01	Wine grape	cytosol	42.27	51.34
PGSC0003DMT400033425	Potato	mitochondrion	41.44	51.19
CDY55513	Canola	plastid	41.71	51.01
TraesCS5A01G262700.1	Wheat	mitochondrion	44.2	50.96
KRH46283	Soybean	mitochondrion	41.44	50.34
CDX67787	Canola	nucleus	37.57	50.18
TraesCS4A01G335900.1	Wheat	plastid	40.61	50.0
CDY17721	Canola	mitochondrion	27.07	50.0
AT3G59220.1	Thale cress	cytosol	39.5	49.83
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	41.16	49.5
KRG98621	Soybean	nucleus	30.94	49.34
KRH14295	Soybean	cytosol	40.88	49.17
CDX83501	Canola	mitochondrion	43.09	48.75
CDY17946	Canola	mitochondrion	42.82	48.74
CDY42802	Canola	mitochondrion	42.82	48.29
CDY06015	Canola	cytosol	37.85	48.24
Solyc09g098180.2.1	Tomato	plastid	43.92	48.18
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	13.26	48.0
CDX98356	Canola	cytosol	34.81	47.73
AT3G59260.1	Thale cress	cytosol	35.64	47.6
CDY57498	Canola	cytosol	36.46	47.48
KRH01821	Soybean	plastid	41.99	46.91
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	40.06	46.77
CDY22806	Canola	cytosol	39.23	45.66
CDY37125	Canola	cytosol	39.23	45.66
Bra018859.1-P	Field mustard	cytosol	38.95	45.34
KRH46866	Soybean	plastid	40.61	45.23
Solyc12g014590.1.1	Tomato	mitochondrion	40.61	44.95
CDY06016	Canola	cytosol	33.15	44.94
CDY00611	Canola	nucleus	35.64	44.64
CDX89016	Canola	nucleus	35.64	44.48
CDY57499	Canola	cytoskeleton, cytosol, nucleus	37.85	44.34
Bra014547.1-P	Field mustard	nucleus	35.36	44.14
TraesCS4A01G336000.2	Wheat	nucleus	40.06	43.81
TraesCS4A01G336200.2	Wheat	plastid	44.75	43.78
AT2G43120.2	Thale cress	nucleus	43.92	42.74
Bra007438.1-P	Field mustard	cytosol	21.55	42.16
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	34.53	41.95
Bra007437.1-P	Field mustard	cytosol	22.65	41.84
Solyc07g065160.2.1	Tomato	mitochondrion	34.25	41.61
Bra003367.1-P	Field mustard	cytosol	21.82	41.36
VIT_09s0096g00380.t01	Wine grape	nucleus	8.29	21.43

Protein Annotations

EnsemblPlants:TraesCS1A01G391900.1	EnsemblPlantsGene:TraesCS1A01G391900	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF11	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:558550200..558553714

Molecular Weight (calculated)

38863.3 Da

IEP (calculated)

4.609

GRAVY (calculated)

-0.373

Length

362 amino acids

Sequence
(BLAST)

001: MSAAACVSFC PSPASSRHGA GPIVDVVGLP PAVEEAEERG AERDLLEFGA DGMISASSDS DEDAAAAEID DEEEHSVRRP RAVVQKFMCE RKAVGDGFVL
101: RRSIGRPELQ SLDPFISLDE FEFSRPAGFS DHPHRGFENV TYMLEGGLSY HDFSGHKGTI NTGDVQWMTA GRGVVHAEMP GGEGVQRGLN LWLNLSSKDK
201: MVAPRYQDLR SHDVPTAEKD GVSIKVIAGE ALGARSPIQT RTPAMWLDVT MRPGARLRQP VPAGWSACAY VLDGEASFGQ PGDEAAGAHQ CVVFGGDGDG
301: VDVRSDSATT RFLLLAARPH GEAVALDGPF VMNTSEEAQQ AREDYLNRRN GFEMAAGWTS SQ

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.