Factsheet for TraesCS4A01G336200.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533500.1	Wheat	plastid	79.73	98.01
TraesCS5B01G536000.2	Wheat	plastid	97.84	97.84
TraesCS4A01G336100.1	Wheat	nucleus	74.32	93.54
TraesCS4A01G335900.1	Wheat	plastid	66.76	84.01
TraesCS4A01G336000.2	Wheat	nucleus	66.22	74.02
VIT_05s0094g00610.t01	Wine grape	cytosol	21.35	73.15
PGSC0003DMT400031088	Potato	cytosol	57.3	71.62
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	56.49	71.09
Os03t0845000-01	Rice	plasma membrane	68.92	70.64
Zm00001d008595_P001	Maize	plastid	62.97	70.39
GSMUA_Achr3P02460_001	Banana	cytosol	55.68	69.83
Solyc09g098160.2.1	Tomato	mitochondrion	54.86	69.76
GSMUA_Achr9P01680_001	Banana	cytosol	55.95	69.7
HORVU5Hr1G120800.4	Barley	plastid	83.51	69.59
GSMUA_Achr10P...	Banana	cytosol	55.41	68.79
OQU90634	Sorghum	mitochondrion	65.95	68.35
PGSC0003DMT400031070	Potato	mitochondrion	52.97	68.06
Solyc09g098180.2.1	Tomato	plastid	57.84	64.85
VIT_19s0090g01530.t01	Wine grape	cytosol	52.16	64.77
Zm00001d034829_P001	Maize	mitochondrion	65.95	64.38
KRH46866	Soybean	plastid	55.41	63.08
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	17.03	63.0
KRH01821	Soybean	plastid	55.14	62.96
PGSC0003DMT400033425	Potato	mitochondrion	49.19	62.12
KRH46283	Soybean	mitochondrion	50.0	62.08
KRH14295	Soybean	cytosol	50.0	61.46
Bra004746.1-P	Field mustard	plastid	48.92	61.15
CDY55513	Canola	plastid	48.92	61.15
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	49.73	61.13
Bra000289.1-P	Field mustard	cytosol	48.38	60.68
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	16.22	60.61
KRG98621	Soybean	nucleus	37.03	60.35
CDY17721	Canola	mitochondrion	31.62	59.69
CDY17946	Canola	mitochondrion	50.27	58.49
AT3G59220.1	Thale cress	cytosol	45.14	58.19
TraesCS5A01G262700.1	Wheat	mitochondrion	49.19	57.96
CDX83501	Canola	mitochondrion	50.0	57.81
CDY42802	Canola	mitochondrion	48.92	56.39
CDY22806	Canola	cytosol	47.03	55.95
CDY37125	Canola	cytosol	46.76	55.63
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	46.49	55.48
Bra018859.1-P	Field mustard	cytosol	46.49	55.31
AT3G59260.1	Thale cress	cytosol	40.27	54.98
Solyc12g014590.1.1	Tomato	mitochondrion	48.38	54.74
CDX67787	Canola	nucleus	39.73	54.24
CDX98356	Canola	cytosol	38.11	53.41
CDX89016	Canola	nucleus	41.62	53.1
CDY06016	Canola	cytosol	37.57	52.06
CDY06015	Canola	cytosol	39.73	51.76
Bra014547.1-P	Field mustard	nucleus	40.54	51.72
CDY57498	Canola	cytosol	38.65	51.44
CDY00611	Canola	nucleus	40.0	51.21
CDY57499	Canola	cytoskeleton, cytosol, nucleus	42.43	50.81
Bra007437.1-P	Field mustard	cytosol	26.49	50.0
AT2G43120.2	Thale cress	nucleus	50.0	49.73
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.49	48.76
Bra003367.1-P	Field mustard	cytosol	25.14	48.69
Solyc07g065160.2.1	Tomato	mitochondrion	38.92	48.32
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	38.38	47.65
Bra007438.1-P	Field mustard	cytosol	22.97	45.95
TraesCS1A01G391900.1	Wheat	plastid	43.78	44.75
VIT_09s0096g00380.t01	Wine grape	nucleus	11.35	30.0

Protein Annotations

EnsemblPlants:TraesCS4A01G336200.2	EnsemblPlantsGene:TraesCS4A01G336200	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr4A:-:618528523..618530057

Molecular Weight (calculated)

40118.0 Da

IEP (calculated)

9.472

GRAVY (calculated)

-0.119

Length

370 amino acids

Sequence
(BLAST)

001: MPRHSAASPI YTALARLANF NSGRRVLLAS RKTSSSSARS SAKTRPFLCL AVLLLLILVV TAVFLFPPAI MSSSSSSSAA AASVPFQSPR KVVKKVLSLS
101: QSEGQGATVR RSIGGHEVRN LDPFLLLDEF SVSKPAGFPD HPHRGFETVT YMLDGVFTHQ DFSGHTGTIR TGDVQWMTAG RGIVHSEMPA ADGVQKGLQL
201: WINLASKDKM IEPRYQELES KDISQAEKDG VAVRIIAGEA FGVRSPVYTR TPTMYMDFTM QPGSQLHQPI PEGWNAFVYI IEGEGVFGKE GAAPASAHHC
301: LVLGAGDGLS VWNRSGALLR FALAAGQPLN EPVVQQGPFI MNSRAQIQQT MEDYYYGRNG FEKASQWSSA

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.