Factsheet for TraesCS4A01G336100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533400.1	Wheat	cytosol	96.94	96.94
TraesCS5B01G535900.1	Wheat	plastid	95.92	95.92
TraesCS4A01G335900.1	Wheat	plastid	83.33	83.33
TraesCS4A01G336000.2	Wheat	nucleus	84.69	75.23
TraesCS4A01G336200.2	Wheat	plastid	93.54	74.32
VIT_05s0094g00610.t01	Wine grape	cytosol	27.21	74.07
GSMUA_Achr9P01680_001	Banana	cytosol	72.79	72.05
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	71.77	71.77
GSMUA_Achr10P...	Banana	cytosol	72.45	71.48
PGSC0003DMT400031088	Potato	cytosol	71.77	71.28
GSMUA_Achr3P02460_001	Banana	cytosol	71.43	71.19
Solyc09g098160.2.1	Tomato	mitochondrion	70.41	71.13
Zm00001d008595_P001	Maize	plastid	78.91	70.09
PGSC0003DMT400031070	Potato	mitochondrion	68.03	69.44
Os03t0845000-01	Rice	plasma membrane	84.35	68.7
OQU90634	Sorghum	mitochondrion	80.27	66.11
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	22.45	66.0
VIT_19s0090g01530.t01	Wine grape	cytosol	66.33	65.44
Solyc09g098180.2.1	Tomato	plastid	72.79	64.85
KRH01821	Soybean	plastid	70.07	63.58
PGSC0003DMT400033425	Potato	mitochondrion	62.93	63.14
KRH46866	Soybean	plastid	69.73	63.08
KRH46283	Soybean	mitochondrion	62.93	62.08
KRH14295	Soybean	cytosol	63.27	61.79
Bra004746.1-P	Field mustard	plastid	61.9	61.49
CDY55513	Canola	plastid	61.9	61.49
Zm00001d034829_P001	Maize	mitochondrion	79.25	61.48
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	62.93	61.46
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	20.41	60.61
Bra000289.1-P	Field mustard	cytosol	60.54	60.34
CDY17721	Canola	mitochondrion	39.46	59.18
KRG98621	Soybean	nucleus	45.58	59.03
AT3G59220.1	Thale cress	cytosol	57.14	58.54
TraesCS5A01G262700.1	Wheat	mitochondrion	61.9	57.96
CDY17946	Canola	mitochondrion	62.59	57.86
CDX83501	Canola	mitochondrion	62.24	57.19
CDY42802	Canola	mitochondrion	61.56	56.39
CDY22806	Canola	cytosol	59.18	55.95
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	58.84	55.81
Solyc12g014590.1.1	Tomato	mitochondrion	61.9	55.66
CDY37125	Canola	cytosol	58.84	55.63
AT3G59260.1	Thale cress	cytosol	51.02	55.35
Bra018859.1-P	Field mustard	cytosol	58.5	55.31
CDX67787	Canola	nucleus	50.0	54.24
CDX98356	Canola	cytosol	47.96	53.41
CDX89016	Canola	nucleus	52.04	52.76
CDY06016	Canola	cytosol	47.62	52.43
Bra014547.1-P	Field mustard	nucleus	51.7	52.41
HORVU5Hr1G120810.1	Barley	plastid	43.88	51.81
CDY06015	Canola	cytosol	50.0	51.76
CDY00611	Canola	nucleus	50.68	51.56
CDY57498	Canola	cytosol	48.64	51.44
Bra007437.1-P	Field mustard	cytosol	33.67	50.51
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	34.35	50.25
CDY57499	Canola	cytoskeleton, cytosol, nucleus	52.72	50.16
AT2G43120.2	Thale cress	nucleus	62.24	49.19
Solyc07g065160.2.1	Tomato	mitochondrion	49.32	48.66
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	48.98	48.32
Bra003367.1-P	Field mustard	cytosol	30.95	47.64
Bra007438.1-P	Field mustard	cytosol	28.57	45.41
TraesCS1A01G391900.1	Wheat	plastid	54.76	44.48
VIT_09s0096g00380.t01	Wine grape	nucleus	13.61	28.57

Protein Annotations

EnsemblPlants:TraesCS4A01G336100.1	EnsemblPlantsGene:TraesCS4A01G336100	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SUPFAM:SSF51182	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr4A:-:618463034..618464665

Molecular Weight (calculated)

32144.0 Da

IEP (calculated)

6.166

GRAVY (calculated)

-0.350

Length

294 amino acids

Sequence
(BLAST)

001: MSSSSTPVPF ENPRKVVKKV LSLSQSEGDG ATVRRSIGGC ELRNLDPFLL LDEFSVSKPA GFPDHPHRGF ETVTYMLDGA FTHQDFSGRK GTIRTGDVQW
101: MTAGRGIVHS EMPAADGVQK GLQLWINLAS KDKMIEPRYQ ELESKDISQA EKDGVAVRII AGEAFGVRSP VYTQTPTMYM DFTMQPGSQL HQPIPEGWNA
201: FVYIIEGEGV FGKEGAAPAS AHHCLVLSAG DGLSVWNRSG APLRFALAAG QPLNEPVVQQ GPFVMNSRAQ IQQAMEDYYY GRNGFEKASQ WSSA

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.