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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX95014

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G59220.1 CDX95014 AT1G09030.1 17322342
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007437.1-P Field mustard cytosol 71.91 97.96
CDY57499 Canola cytoskeleton, cytosol, nucleus 97.0 83.82
CDX89016 Canola nucleus 83.52 76.9
AT3G59220.1 Thale cress cytosol 79.78 74.22
CDY00611 Canola nucleus 79.4 73.36
CDX67787 Canola nucleus 61.8 60.89
CDX98356 Canola cytosol 59.93 60.61
CDY55513 Canola plastid 63.3 57.09
CDY06015 Canola cytosol 59.18 55.63
CDY57498 Canola cytosol 57.68 55.4
CDY17946 Canola mitochondrion 64.79 54.4
CDY42802 Canola mitochondrion 65.17 54.21
CDX83501 Canola mitochondrion 64.42 53.75
VIT_05s0062g01190.t01 Wine grape cytosol, nucleus, peroxisome 56.18 51.02
PGSC0003DMT400031088 Potato cytosol 56.18 50.68
PGSC0003DMT400031070 Potato mitochondrion 52.81 48.96
Solyc09g098160.2.1 Tomato mitochondrion 53.18 48.8
GSMUA_Achr10P... Banana cytosol 53.93 48.32
GSMUA_Achr3P02460_001 Banana cytosol 52.81 47.8
TraesCS5B01G535900.1 Wheat plastid 52.43 47.62
TraesCS4A01G336100.1 Wheat nucleus 52.43 47.62
TraesCS5D01G533400.1 Wheat cytosol 52.06 47.28
TraesCS5D01G533500.1 Wheat plastid 52.81 46.84
GSMUA_Achr9P01680_001 Banana cytosol 52.06 46.8
CDY17721 Canola mitochondrion 34.08 46.43
TraesCS5D01G533200.1 Wheat cytosol, mitochondrion, nucleus, plastid 50.56 46.39
Os09t0484800-01 Rice cytosol, mitochondrion 51.31 46.13
EER96962 Sorghum cytosol 50.56 45.92
Solyc09g098180.2.1 Tomato plastid 56.18 45.45
KRH01821 Soybean plastid 54.68 45.06
KRH46866 Soybean plastid 54.31 44.62
Zm00001d020915_P002 Maize cytosol 49.06 44.26
GSMUA_Achr3P11020_001 Banana cytosol 49.81 44.19
HORVU5Hr1G072760.2 Barley mitochondrion 49.44 43.56
TraesCS5B01G261100.1 Wheat mitochondrion 49.44 43.28
Zm00001d008595_P001 Maize plastid 53.18 42.9
TraesCS5D01G270300.1 Wheat cytosol 48.31 42.57
HORVU5Hr1G092220.3 Barley mitochondrion, peroxisome 20.6 42.31
HORVU5Hr1G120790.2 Barley cytosol 51.69 41.95
TraesCS4A01G335900.1 Wheat plastid 46.07 41.84
TraesCS5A01G262700.1 Wheat mitochondrion 49.06 41.72
VIT_05s0094g00610.t01 Wine grape cytosol 16.85 41.67
VIT_09s0096g00130.t01 Wine grape cytosol, nucleus, plastid 15.36 41.0
OQU90634 Sorghum mitochondrion 54.31 40.62
CDY37125 Canola cytosol 46.44 39.87
CDY22806 Canola cytosol 46.44 39.87
Os03t0845000-01 Rice plasma membrane 53.56 39.61
TraesCS4A01G336000.2 Wheat nucleus 48.69 39.27
TraesCS5B01G536000.2 Wheat plastid 52.81 38.11
TraesCS4A01G336200.2 Wheat plastid 52.06 37.57
Zm00001d034829_P001 Maize mitochondrion 53.18 37.47
TraesCS5B01G535700.3 Wheat plastid 51.69 37.4
TraesCS5B01G535800.1 Wheat plastid 51.31 36.83
TraesCS5D01G533100.1 Wheat plastid 51.69 36.6
HORVU5Hr1G120780.3 Barley plastid 51.31 35.68
Os08t0364900-00 Rice plastid 45.69 34.66
TraesCS1B01G420000.1 Wheat plastid 46.07 34.17
TraesCS1A01G391900.1 Wheat plastid 44.94 33.15
TraesCS1D01G400000.1 Wheat plastid 44.57 33.06
HORVU5Hr1G120800.4 Barley plastid 52.81 31.76
HORVU1Hr1G086450.3 Barley endoplasmic reticulum, plastid 43.82 29.4
Zm00001d032363_P001 Maize cytosol 40.45 28.8
EES14882 Sorghum cytosol, plastid 39.33 27.78
Zm00001d046171_P001 Maize endoplasmic reticulum, mitochondrion, nucleus, plastid 20.6 27.36
Zm00001d009514_P001 Maize cytosol, endoplasmic reticulum 9.74 26.26
HORVU5Hr1G120810.1 Barley plastid 23.22 24.9
VIT_09s0096g00380.t01 Wine grape nucleus 9.36 17.86
Protein Annotations
EnsemblPlants:CDY06016EnsemblPlantsGene:GSBRNA2T00121862001Gene3D:2.60.120.10InterPro:IPR014710InterPro:PirinInterPro:Pirin_C_dom
InterPro:Pirin_N_domInterPro:RmlC-like_jellyrollInterPro:RmlC_Cupin_sfPANTHER:PTHR13903PANTHER:PTHR13903:SF5PFAM:PF02678
PFAM:PF05726PIRSF:PIRSF006232ProteinID:CDY06016ProteinID:CDY06016.1SUPFAM:SSF51182UniParc:UPI0004EE35DC
MapMan:35.1:::::
Description
BnaA09g37640D
Coordinates
chrLK031967:-:233716..235173
Molecular Weight (calculated)
29341.2 Da
IEP (calculated)
5.850
GRAVY (calculated)
-0.045
Length
267 amino acids
Sequence
(BLAST)
001: MSASCDSDRV TRQVIKNVLA KLQKEGEGAL VRNGITEIHQ ALLDPFVLLV DFSFSLTAGF ADHPHRGFES VTYMLKGGII HKYLKGNEST IKAGDVQLWI
101: NLPSIHRMIE PKNLELSSLE IPRAEKDGVE VKVIAGDSLG IKSPYYTTTP IMFLDFTLKP GSQTHQTVPE SWTAFAYILE GDDGVFGSLK SLAIQAHHVV
201: VFGPGDLVSV WNKSTSRALR FLLIAGEPIG EPLVQCGPFV MSSQDEIDMA FEDYRNAKNG FELAKSS
Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)
001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF
Arabidopsis Description
Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.