CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU88166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	OQU88166	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032363_P001	Maize	cytosol	70.11	70.67
Os08t0364900-00	Rice	plastid	60.05	64.49
TraesCS1B01G420000.1	Wheat	plastid	56.08	58.89
TraesCS1A01G391900.1	Wheat	plastid	55.56	58.01
TraesCS1D01G400000.1	Wheat	plastid	54.5	57.22
VIT_05s0094g00610.t01	Wine grape	cytosol	15.61	54.63
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	53.7	51.01
Solyc09g098160.2.1	Tomato	mitochondrion	39.15	50.86
PGSC0003DMT400031088	Potato	cytosol	39.42	50.34
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	38.89	50.0
PGSC0003DMT400031070	Potato	mitochondrion	37.83	49.65
Bra000289.1-P	Field mustard	cytosol	38.36	49.15
EER96962	Sorghum	cytosol	38.1	48.98
CDX67787	Canola	nucleus	34.66	48.34
VIT_19s0090g01530.t01	Wine grape	cytosol	38.1	48.32
Bra004746.1-P	Field mustard	plastid	37.57	47.97
CDY55513	Canola	plastid	37.3	47.64
CDY17721	Canola	mitochondrion	24.34	46.94
CDX98356	Canola	cytosol	32.54	46.59
KRH14295	Soybean	cytosol	37.04	46.51
PGSC0003DMT400033425	Potato	mitochondrion	35.98	46.42
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	36.77	46.18
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	12.17	46.0
KRH46283	Soybean	mitochondrion	36.24	45.97
OQU90634	Sorghum	mitochondrion	43.12	45.66
AT3G59220.1	Thale cress	cytosol	34.66	45.64
CDX83501	Canola	mitochondrion	38.62	45.62
CDY42802	Canola	mitochondrion	38.62	45.48
AT3G59260.1	Thale cress	cytosol	32.54	45.39
CDY17946	Canola	mitochondrion	38.1	45.28
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	37.04	45.16
Solyc09g098180.2.1	Tomato	plastid	39.42	45.15
KRG98621	Soybean	nucleus	26.72	44.49
CDY06015	Canola	cytosol	33.33	44.37
CDY57498	Canola	cytosol	32.28	43.88
KRH01821	Soybean	plastid	37.04	43.21
CDY37125	Canola	cytosol	35.45	43.09
KRH46866	Soybean	plastid	37.04	43.08
CDY22806	Canola	cytosol	35.19	42.77
Bra018859.1-P	Field mustard	cytosol	34.92	42.44
Solyc12g014590.1.1	Tomato	mitochondrion	34.66	40.06
CDY00611	Canola	nucleus	30.42	39.79
CDX89016	Canola	nucleus	30.42	39.66
CDY06016	Canola	cytosol	27.78	39.33
Bra014547.1-P	Field mustard	nucleus	30.16	39.31
Bra007438.1-P	Field mustard	cytosol	19.05	38.92
Bra003367.1-P	Field mustard	cytosol	19.58	38.74
AT2G43120.2	Thale cress	nucleus	38.1	38.71
CDY57499	Canola	cytoskeleton, cytosol, nucleus	31.48	38.51
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	28.31	35.91
Solyc07g065160.2.1	Tomato	mitochondrion	28.04	35.57
Bra007437.1-P	Field mustard	cytosol	18.25	35.2
VIT_09s0096g00380.t01	Wine grape	nucleus	7.14	19.29

Protein Annotations

Gene3D:2.60.120.10	MapMan:35.1	EntrezGene:8069878	UniProt:C5YK90	ncoils:Coil	EnsemblPlants:EES14882
ProteinID:EES14882	ProteinID:EES14882.1	InterPro:IPR014710	PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232
PANTHER:PTHR13903	PANTHER:PTHR13903:SF11	InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll
InterPro:RmlC_Cupin_sf	EnsemblPlantsGene:SORBI_3007G107000	SUPFAM:SSF51182	unigene:Sbi.8961	UniParc:UPI0001A87927	RefSeq:XP_002445387.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:38616421..38620470

Molecular Weight (calculated)

40368.3 Da

IEP (calculated)

5.406

GRAVY (calculated)

-0.313

Length

378 amino acids

Sequence
(BLAST)

001: MSAATACMPL VPPSPLHGSS AAMAAAVERR QQPGAMETTK TAGSEGTVVV KSHGNDQDCA GDDDGDVTMS RPRAVVQTLT CERKPFSEGF ALWRSIGRPE
101: LPELDPILSF DEFEFSAPAG FPDHPHRGFE NVTYMLEGGI SYHDFSGHKG TINTGDVQWL TAGRGVVHAE MPAGEGVQRG INIWINLSAA DKMVEPRYQD
201: LASHDIPTAV TADGVSVKVI AGECLGTRSL LRPRTPALCL DVALRPRARL RQPIPRGWSA CAYVIHGEAA FFGGSASDGG ATTVTTAAAR TLVVFGNEGD
301: GDCVEVRGAD ASAGQQDGAR VMLVAARPHN EAVVRDGPFV MNTREEVEQA REDYRRRRNG FEMADGWTSD HASTVATH

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.