CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU88166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	OQU88166	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G535900.1	Wheat	plastid	66.95	81.29
TraesCS4A01G336100.1	Wheat	nucleus	66.11	80.27
Zm00001d008595_P001	Maize	plastid	73.67	79.46
TraesCS5D01G533500.1	Wheat	plastid	66.95	79.4
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	64.43	79.04
TraesCS5D01G533400.1	Wheat	cytosol	64.99	78.91
PGSC0003DMT400031088	Potato	cytosol	60.78	73.31
Zm00001d034829_P001	Maize	mitochondrion	77.03	72.56
Solyc09g098160.2.1	Tomato	mitochondrion	59.1	72.51
TraesCS4A01G335900.1	Wheat	plastid	59.66	72.45
VIT_05s0094g00610.t01	Wine grape	cytosol	21.85	72.22
GSMUA_Achr3P02460_001	Banana	cytosol	59.66	72.2
PGSC0003DMT400031070	Potato	mitochondrion	57.42	71.18
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	58.54	71.09
HORVU5Hr1G120790.2	Barley	cytosol	65.27	70.82
GSMUA_Achr9P01680_001	Banana	cytosol	58.82	70.71
Os03t0845000-01	Rice	plasma membrane	71.15	70.36
GSMUA_Achr10P...	Banana	cytosol	58.54	70.13
Solyc09g098180.2.1	Tomato	plastid	62.18	67.27
VIT_19s0090g01530.t01	Wine grape	cytosol	56.02	67.11
TraesCS5B01G536000.2	Wheat	plastid	68.63	66.22
EER96962	Sorghum	cytosol	54.34	65.99
TraesCS4A01G336200.2	Wheat	plastid	68.35	65.95
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	18.21	65.0
TraesCS5B01G535800.1	Wheat	plastid	67.51	64.78
TraesCS5D01G533100.1	Wheat	plastid	68.07	64.46
PGSC0003DMT400033425	Potato	mitochondrion	52.66	64.16
KRH01821	Soybean	plastid	57.98	63.89
Bra004746.1-P	Field mustard	plastid	52.66	63.51
TraesCS5B01G535700.3	Wheat	plastid	65.55	63.41
KRH14295	Soybean	cytosol	53.22	63.12
Bra000289.1-P	Field mustard	cytosol	52.1	63.05
TraesCS4A01G336000.2	Wheat	nucleus	58.26	62.84
CDY55513	Canola	plastid	52.1	62.84
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	17.37	62.63
KRH46866	Soybean	plastid	56.86	62.46
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	52.66	62.46
KRH46283	Soybean	mitochondrion	51.82	62.08
HORVU5Hr1G120780.3	Barley	plastid	66.39	61.72
CDY17721	Canola	mitochondrion	33.61	61.22
KRG98621	Soybean	nucleus	38.1	59.91
CDY17946	Canola	mitochondrion	53.22	59.75
CDX83501	Canola	mitochondrion	53.5	59.69
AT3G59220.1	Thale cress	cytosol	47.62	59.23
CDY42802	Canola	mitochondrion	53.22	59.19
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	50.14	57.74
Bra018859.1-P	Field mustard	cytosol	49.86	57.23
CDY22806	Canola	cytosol	49.58	56.91
Solyc12g014590.1.1	Tomato	mitochondrion	52.1	56.88
CDX67787	Canola	nucleus	43.14	56.83
CDY37125	Canola	cytosol	49.3	56.59
AT3G59260.1	Thale cress	cytosol	42.3	55.72
CDX98356	Canola	cytosol	40.9	55.3
HORVU5Hr1G120800.4	Barley	plastid	68.35	54.95
CDY06016	Canola	cytosol	40.62	54.31
CDX89016	Canola	nucleus	43.98	54.14
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	30.25	53.73
Bra007437.1-P	Field mustard	cytosol	29.41	53.57
Bra014547.1-P	Field mustard	nucleus	43.42	53.45
CDY06015	Canola	cytosol	42.3	53.17
CDY57499	Canola	cytoskeleton, cytosol, nucleus	45.94	53.07
CDY00611	Canola	nucleus	42.58	52.6
CDY57498	Canola	cytosol	40.9	52.52
AT2G43120.2	Thale cress	nucleus	54.34	52.15
Bra003367.1-P	Field mustard	cytosol	26.89	50.26
Solyc07g065160.2.1	Tomato	mitochondrion	40.62	48.66
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	40.62	48.66
HORVU5Hr1G120810.1	Barley	plastid	33.33	47.79
Bra007438.1-P	Field mustard	cytosol	24.65	47.57
EES14882	Sorghum	cytosol, plastid	45.66	43.12
VIT_09s0096g00380.t01	Wine grape	nucleus	11.2	28.57

Protein Annotations

EnsemblPlants:OQU90634	EnsemblPlantsGene:SORBI_3001G015100	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	ProteinID:OQU90634	ProteinID:OQU90634.1	SEG:seg	SUPFAM:SSF51182
UniParc:UPI000B8B971E	UniProt:A0A1Z5S3X7	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1346247..1348023

Molecular Weight (calculated)

39232.6 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.452

Length

357 amino acids

Sequence
(BLAST)

001: MTTTMMRLRQ HLGLASSSSS SSPAIIYLYL RHRQARQQHP PPPNNSVLLP PARPRIMSSS ASDSASSAAP FEKPRAVVKK LLAESQPEGQ GATVRRSIGR
101: HELRNLDPFL MLDEFSVSKP AGFPDHPHRG FETVTYMLEG AFTHQDFAGH KGTIKTGDVQ WMTAGRGIVH SEMPAGDGVQ KGLQLWINLS AKDKMIEPRY
201: QELESKDISR GERDGVEARV IAGEALGAAS PVYTRTPTMY VDFTMRPGSR LHQPVPEGWN AFVYVVDGEG VFGRDKAAPT AAHHCLVLGP GDGLSVWNRS
301: DRPLRFVLVA GKPLGEPVVQ HGPFVMNSRA EIQQAMEDYY YGKNGFERAS QWSSSSA

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.