Factsheet for TraesCS5B01G535700.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	73.98	93.81
TraesCS5B01G535900.1	Wheat	plastid	72.36	90.82
HORVU5Hr1G120790.2	Barley	cytosol	70.73	79.33
TraesCS5B01G535800.1	Wheat	plastid	77.78	77.15
TraesCS5B01G536000.2	Wheat	plastid	75.88	75.68
TraesCS4A01G336000.2	Wheat	nucleus	67.48	75.23
HORVU5Hr1G120780.3	Barley	plastid	78.05	75.0
VIT_05s0094g00610.t01	Wine grape	cytosol	21.41	73.15
PGSC0003DMT400031088	Potato	cytosol	56.91	70.95
Solyc09g098160.2.1	Tomato	mitochondrion	55.83	70.79
GSMUA_Achr3P02460_001	Banana	cytosol	56.37	70.51
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	56.1	70.41
GSMUA_Achr9P01680_001	Banana	cytosol	56.1	69.7
Zm00001d008595_P001	Maize	plastid	62.06	69.18
PGSC0003DMT400031070	Potato	mitochondrion	53.93	69.1
GSMUA_Achr10P...	Banana	cytosol	55.56	68.79
Os03t0845000-01	Rice	plasma membrane	66.12	67.59
OQU90634	Sorghum	mitochondrion	63.41	65.55
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	17.62	65.0
Solyc09g098180.2.1	Tomato	plastid	57.72	64.55
Zm00001d034829_P001	Maize	mitochondrion	65.85	64.12
VIT_19s0090g01530.t01	Wine grape	cytosol	51.22	63.42
KRH46866	Soybean	plastid	55.28	62.77
KRH01821	Soybean	plastid	55.01	62.65
PGSC0003DMT400033425	Potato	mitochondrion	48.51	61.09
KRH46283	Soybean	mitochondrion	49.32	61.07
KRH14295	Soybean	cytosol	49.59	60.8
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	49.32	60.47
CDY55513	Canola	plastid	48.24	60.14
Bra004746.1-P	Field mustard	plastid	48.24	60.14
CDY17721	Canola	mitochondrion	31.71	59.69
Bra000289.1-P	Field mustard	cytosol	47.7	59.66
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	15.99	59.6
TraesCS5B01G261100.1	Wheat	mitochondrion	48.78	59.02
KRG98621	Soybean	nucleus	36.04	58.59
AT3G59220.1	Thale cress	cytosol	45.26	58.19
CDY17946	Canola	mitochondrion	49.05	56.92
CDX83501	Canola	mitochondrion	49.32	56.88
CDY42802	Canola	mitochondrion	49.05	56.39
CDY22806	Canola	cytosol	46.61	55.31
CDY37125	Canola	cytosol	46.34	54.98
AT3G59260.1	Thale cress	cytosol	40.38	54.98
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	46.07	54.84
Bra018859.1-P	Field mustard	cytosol	46.07	54.66
Solyc12g014590.1.1	Tomato	mitochondrion	47.7	53.82
CDX67787	Canola	nucleus	39.02	53.14
CDY06015	Canola	cytosol	40.38	52.46
CDX89016	Canola	nucleus	41.19	52.41
CDX98356	Canola	cytosol	37.4	52.27
CDY57498	Canola	cytosol	39.3	52.16
Bra014547.1-P	Field mustard	nucleus	40.92	52.07
CDY06016	Canola	cytosol	37.4	51.69
CDY00611	Canola	nucleus	39.84	50.87
AT2G43120.2	Thale cress	nucleus	50.68	50.27
Bra007437.1-P	Field mustard	cytosol	26.56	50.0
CDY57499	Canola	cytoskeleton, cytosol, nucleus	41.73	49.84
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	26.56	48.76
Solyc07g065160.2.1	Tomato	mitochondrion	38.48	47.65
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	38.48	47.65
Bra003367.1-P	Field mustard	cytosol	24.66	47.64
TraesCS1B01G420000.1	Wheat	plastid	44.99	46.11
Bra007438.1-P	Field mustard	cytosol	23.04	45.95
VIT_09s0096g00380.t01	Wine grape	nucleus	10.84	28.57

Protein Annotations

EnsemblPlants:TraesCS5B01G535700.3	EnsemblPlantsGene:TraesCS5B01G535700	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	TMHMM:TMhelix	MapMan:35.1

Description

No Description!

Coordinates

chr5B:-:691772470..691774013

Molecular Weight (calculated)

40621.9 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.167

Length

369 amino acids

Sequence
(BLAST)

001: MLRQHLPLFS SSSYSPIYMA LSRLTRQNSH RLPPASTKTS SRSSAKTKPL LFLLLLIVIL VVTAVFLFPP AIMSSSSPSA ASVPFESPRK VVKKVLSLSQ
101: SEGDGATVRR SIGGHELRNL DPFLLLDEFS VSKPGGFPDH PHRGFETVTY MLHGAFTHQD FSGRKGTIRT GDVQWMTAGR GIVHSEMPAS NGVQKGLQLW
201: INLASKDKMI EPRYQELKSK DISQAEKHGV KVRIIAGEAF GVRSPVYTRT PTMYMDFTMQ PGSQLHQPIL EGWNAFVYII EGEGVFGREG DVAASAHHCL
301: VLGAGDGLSV WNRSGALLRF VLAAGQPLNE PVVQQGLFVM NSRAQIQQAM QDYYYGRNGF EKASQWSSA

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.