Factsheet for TraesCS5B01G261100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457000.1
TraesCS3D01G450000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	TraesCS3A01G457000.1	AT1G09030.1	17322342
AT3G59220.1	TraesCS3D01G450000.1	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	41.97	98.46
TraesCS5D01G270300.1	Wheat	cytosol	97.05	97.69
HORVU5Hr1G072760.2	Barley	mitochondrion	95.41	96.04
TraesCS5A01G262700.1	Wheat	mitochondrion	96.39	93.63
Os09t0484800-01	Rice	cytosol, mitochondrion	85.9	88.22
EER96962	Sorghum	cytosol	83.28	86.39
Zm00001d020915_P002	Maize	cytosol	82.95	85.47
GSMUA_Achr3P11020_001	Banana	cytosol	76.07	77.08
PGSC0003DMT400033425	Potato	mitochondrion	70.16	73.04
VIT_19s0090g01530.t01	Wine grape	cytosol	69.84	71.48
KRH14295	Soybean	cytosol	69.18	70.1
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	68.52	69.44
KRH46283	Soybean	mitochondrion	65.25	66.78
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	62.62	64.97
Solyc12g014590.1.1	Tomato	mitochondrion	68.52	63.91
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	64.92	63.87
PGSC0003DMT400031088	Potato	cytosol	61.64	63.51
KRG98621	Soybean	nucleus	46.89	63.0
VIT_05s0094g00610.t01	Wine grape	cytosol	22.3	62.96
TraesCS5B01G535900.1	Wheat	plastid	60.66	62.93
Bra000289.1-P	Field mustard	cytosol	60.66	62.71
CDY37125	Canola	cytosol	63.93	62.7
CDY22806	Canola	cytosol	63.61	62.38
Solyc09g098160.2.1	Tomato	mitochondrion	59.34	62.2
PGSC0003DMT400031070	Potato	mitochondrion	58.69	62.15
Bra018859.1-P	Field mustard	cytosol	63.28	62.06
Bra004746.1-P	Field mustard	plastid	59.34	61.15
CDY55513	Canola	plastid	58.69	60.47
CDX83501	Canola	mitochondrion	60.98	58.12
CDY42802	Canola	mitochondrion	60.33	57.32
CDY17946	Canola	mitochondrion	59.67	57.23
Solyc09g098180.2.1	Tomato	plastid	61.31	56.67
KRH46866	Soybean	plastid	60.0	56.31
KRH01821	Soybean	plastid	59.67	56.17
AT3G59220.1	Thale cress	cytosol	52.13	55.4
CDY17721	Canola	mitochondrion	35.41	55.1
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	18.03	55.0
AT3G59260.1	Thale cress	cytosol	47.54	53.51
CDY06015	Canola	cytosol	48.52	52.11
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	50.16	51.34
CDX67787	Canola	nucleus	45.57	51.29
CDX98356	Canola	cytosol	44.26	51.14
CDX89016	Canola	nucleus	48.52	51.03
CDY57498	Canola	cytosol	45.9	50.36
Solyc07g065160.2.1	Tomato	mitochondrion	49.18	50.34
Bra014547.1-P	Field mustard	nucleus	47.54	50.0
TraesCS5B01G536000.2	Wheat	plastid	60.33	49.73
CDY06016	Canola	cytosol	43.28	49.44
TraesCS5B01G535800.1	Wheat	plastid	59.67	48.92
AT2G43120.2	Thale cress	nucleus	59.67	48.92
TraesCS5B01G535700.3	Wheat	plastid	59.02	48.78
CDY00611	Canola	nucleus	45.57	48.1
CDY57499	Canola	cytoskeleton, cytosol, nucleus	48.2	47.57
Bra007438.1-P	Field mustard	cytosol	28.52	47.03
Bra007437.1-P	Field mustard	cytosol	30.16	46.94
Bra003367.1-P	Field mustard	cytosol	29.18	46.6
TraesCS1B01G420000.1	Wheat	plastid	52.79	44.72
VIT_09s0096g00380.t01	Wine grape	nucleus	11.48	25.0

Protein Annotations

EnsemblPlants:TraesCS5B01G261100.1	EnsemblPlantsGene:TraesCS5B01G261100	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin	InterPro:Pirin_C_dom
InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5	PFAM:PF02678
PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	MapMan:35.1	:

Description

No Description!

Coordinates

chr5B:+:445593885..445595408

Molecular Weight (calculated)

33526.8 Da

IEP (calculated)

5.798

GRAVY (calculated)

-0.266

Length

305 amino acids

Sequence
(BLAST)

001: MSTMEVTKPR QVVRRFLARP QHEGAGAVVR RSIGRFELRY FDPFLVLDEF SASAPAGFPD HPHRGFETVT YMLEGAVTHE DFEGHRGTIK AGDVQWMTAG
101: RGIVHSEMPA GPGTSKGLQL WVNLASKNKM VEPGYQEFQS KDIASTTSAD GDVTVRVIAG ESMGARSPVR TRTPTMYLDF TVRPHAAAPV RQPVPASWNA
201: FVYVLEGEGV FGPTEQPAGA HHLLLLGQGG DGVEVWNRSD KPLRFVLVAG EPIGEPVAQL GPFVMNTEEE IDATVNDFEY FINGFEKAKH WKSQAMIALE
301: LEYVG

Best Arabidopsis Sequence Match ( AT1G50590.1 )
(BLAST)

001: MPISEKSSAT NTRLVVKKLF ARQLHEGFGA VVRRSIGRFE FRYFDPFLVL DEFSVSAPAG FPDHPHRGFE TVTYMLEGEI LHEDCEGHKG VIREGGLQWM
101: TAGKGIVHSE MPSSNSNGIT HNKGLQLWIN LSSRQKLVEP SYQEIESKDI AETEKDGVRV RVIAGEWNGV KSKICTRTPT MYLDFTLSPG SRISQPIPLH
201: WNAFVYVLQG HGHFGDSKLQ HSAAAAHHLL VLGLGGDMLE AWNGSDSGLP LRFILVAGEP IGEPMVQFGP FVMNTQEEID ETIDDFENFR NGFEKARHWK
301: SQAASALGLF

Arabidopsis Description

Pirin-like protein At1g50590 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPS9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.