Factsheet for GSMUA_Achr3P11020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P21910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	GSMUA_Achr8P21910_001	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	37.21	86.15
EER96962	Sorghum	cytosol	76.08	77.89
Os09t0484800-01	Rice	cytosol, mitochondrion	76.41	77.44
VIT_19s0090g01530.t01	Wine grape	cytosol	75.42	76.17
TraesCS5B01G261100.1	Wheat	mitochondrion	77.08	76.07
PGSC0003DMT400033425	Potato	mitochondrion	73.75	75.77
Zm00001d020915_P002	Maize	cytosol	74.42	75.68
TraesCS5D01G270300.1	Wheat	cytosol	76.08	75.58
HORVU5Hr1G072760.2	Barley	mitochondrion	75.42	74.92
KRH14295	Soybean	cytosol	73.75	73.75
KRH73851	Soybean	cytoskeleton, cytosol, nucleus	73.09	73.09
TraesCS5A01G262700.1	Wheat	mitochondrion	76.08	72.93
KRH46283	Soybean	mitochondrion	70.1	70.81
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	67.77	69.39
PGSC0003DMT400031088	Potato	cytosol	67.44	68.58
GSMUA_Achr3P02460_001	Banana	cytosol	67.11	68.47
GSMUA_Achr9P01680_001	Banana	cytosol	66.78	67.68
KRG98621	Soybean	nucleus	50.83	67.4
Solyc12g014590.1.1	Tomato	mitochondrion	73.09	67.28
VIT_05s0094g00610.t01	Wine grape	cytosol	23.92	66.67
Solyc09g098160.2.1	Tomato	mitochondrion	63.46	65.64
GSMUA_Achr10P...	Banana	cytosol	64.78	65.44
PGSC0003DMT400031070	Potato	mitochondrion	62.46	65.28
Bra004746.1-P	Field mustard	plastid	63.12	64.19
Bra000289.1-P	Field mustard	cytosol	62.79	64.07
CDY55513	Canola	plastid	62.46	63.51
CDY22806	Canola	cytosol	63.79	61.74
Bra018859.1-P	Field mustard	cytosol	63.79	61.74
Solyc09g098180.2.1	Tomato	plastid	67.44	61.52
CDY37125	Canola	cytosol	63.46	61.41
AT1G50590.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	62.79	60.97
KRH46866	Soybean	plastid	64.45	59.69
CDX83501	Canola	mitochondrion	63.46	59.69
CDY17946	Canola	mitochondrion	62.79	59.43
CDY42802	Canola	mitochondrion	63.12	59.19
CDY17721	Canola	mitochondrion	38.54	59.18
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	19.6	59.0
KRH01821	Soybean	plastid	63.12	58.64
AT3G59220.1	Thale cress	cytosol	54.49	57.14
AT3G59260.1	Thale cress	cytosol	49.5	54.98
CDY06015	Canola	cytosol	51.83	54.93
CDY57498	Canola	cytosol	49.5	53.6
CDX67787	Canola	nucleus	48.17	53.51
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	52.82	53.36
CDX98356	Canola	cytosol	46.51	53.03
Solyc07g065160.2.1	Tomato	mitochondrion	52.16	52.68
Bra007438.1-P	Field mustard	cytosol	31.56	51.35
AT2G43120.2	Thale cress	nucleus	62.79	50.81
CDX89016	Canola	nucleus	48.84	50.69
Bra003367.1-P	Field mustard	cytosol	31.89	50.26
Bra014547.1-P	Field mustard	nucleus	48.17	50.0
CDY00611	Canola	nucleus	47.84	49.83
CDY06016	Canola	cytosol	44.19	49.81
Bra007437.1-P	Field mustard	cytosol	31.56	48.47
CDY57499	Canola	cytoskeleton, cytosol, nucleus	49.17	47.9
VIT_09s0096g00380.t01	Wine grape	nucleus	12.62	27.14

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11020_001	EnsemblPlants:GSMUA_Achr3T11020_001	EnsemblPlantsGene:GSMUA_Achr3G11020_001	Gene3D:2.60.120.10	InterPro:IPR014710	InterPro:Pirin
InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf	PANTHER:PTHR13903	PANTHER:PTHR13903:SF5
PFAM:PF02678	PFAM:PF05726	PIRSF:PIRSF006232	SEG:seg	SUPFAM:SSF51182	UniParc:UPI0002950DA4
UniProt:M0SDL9	MapMan:35.1	:	:	:	:

Description

Pirin-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G11020_001]

Coordinates

chr3:+:8161935..8164099

Molecular Weight (calculated)

33262.9 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.278

Length

301 amino acids

Sequence
(BLAST)

001: MAETVVPCVL QKPRHVVRKF LAKPQHEGDG AVVRRSIGRF ELRYFDPFLV LDEFSVTAPA GFPDHPHRGF ETVTYMLEGA VTHEDFEGHK GTIKAGDLQW
101: MTAGRGIVHS EMPAGKGTSK GLQLWVNLSS KNKMIEPRYQ EMQSQDIACA SGNGVEVRVI AGESMGVRSP VYTRTPTMYL DFTLKPRAHL RQPIPSAWNA
201: FVYVLEGEGA FGGDKSAPIG PHNLLLLGQG DGVDVWNKSA KPLRFVLVGG EPLGEPVAQL GPFVMNTDEE IDRTIDDFQY CINGFEKAKY WRSEAMVGIE
301: G

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.