Factsheet for PGSC0003DMT400031070

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59220.1	PGSC0003DMT400063671	AT1G09030.1	17322342

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g098160.2.1	Tomato	mitochondrion	96.53	95.53
VIT_05s0094g00610.t01	Wine grape	cytosol	28.47	75.93
VIT_05s0062g01190.t01	Wine grape	cytosol, nucleus, peroxisome	75.35	73.81
PGSC0003DMT400031088	Potato	cytosol	75.35	73.31
HORVU5Hr1G092220.3	Barley	mitochondrion, peroxisome	32.64	72.31
VIT_09s0096g00130.t01	Wine grape	cytosol, nucleus, plastid	24.31	70.0
GSMUA_Achr3P02460_001	Banana	cytosol	71.53	69.83
GSMUA_Achr9P01680_001	Banana	cytosol	71.88	69.7
TraesCS5B01G535900.1	Wheat	plastid	69.79	68.37
TraesCS5D01G533200.1	Wheat	cytosol, mitochondrion, nucleus, plastid	68.75	68.04
TraesCS4A01G336100.1	Wheat	nucleus	69.44	68.03
GSMUA_Achr10P...	Banana	cytosol	70.14	67.79
TraesCS5D01G533400.1	Wheat	cytosol	69.1	67.69
TraesCS5D01G533500.1	Wheat	plastid	68.75	65.78
Bra000289.1-P	Field mustard	cytosol	65.97	64.41
Bra004746.1-P	Field mustard	plastid	65.97	64.19
CDY55513	Canola	plastid	65.62	63.85
PGSC0003DMT400033425	Potato	mitochondrion	64.58	63.48
KRH01821	Soybean	plastid	71.18	63.27
GSMUA_Achr3P11020_001	Banana	cytosol	65.28	62.46
KRH46866	Soybean	plastid	70.14	62.15
CDY17721	Canola	mitochondrion	42.01	61.73
Os09t0484800-01	Rice	cytosol, mitochondrion	63.54	61.62
Zm00001d009514_P001	Maize	cytosol, endoplasmic reticulum	21.18	61.62
EER96962	Sorghum	cytosol	62.5	61.22
HORVU5Hr1G120790.2	Barley	cytosol	69.1	60.49
Zm00001d008595_P001	Maize	plastid	69.44	60.42
AT3G59220.1	Thale cress	cytosol	60.07	60.28
TraesCS4A01G335900.1	Wheat	plastid	61.46	60.2
CDY17946	Canola	mitochondrion	66.32	60.06
CDX83501	Canola	mitochondrion	66.67	60.0
Zm00001d020915_P002	Maize	cytosol	61.46	59.8
CDY42802	Canola	mitochondrion	65.97	59.19
TraesCS5B01G261100.1	Wheat	mitochondrion	62.15	58.69
TraesCS5D01G270300.1	Wheat	cytosol	61.11	58.09
Os03t0845000-01	Rice	plasma membrane	72.57	57.89
HORVU5Hr1G072760.2	Barley	mitochondrion	60.76	57.76
OQU90634	Sorghum	mitochondrion	71.18	57.42
AT3G59260.1	Thale cress	cytosol	53.12	56.46
TraesCS5A01G262700.1	Wheat	mitochondrion	61.46	56.37
CDY00611	Canola	nucleus	55.56	55.36
CDX67787	Canola	nucleus	51.74	54.98
CDX89016	Canola	nucleus	54.51	54.14
TraesCS5B01G535700.3	Wheat	plastid	69.1	53.93
Bra014547.1-P	Field mustard	nucleus	54.17	53.79
CDX98356	Canola	cytosol	49.31	53.79
TraesCS5B01G536000.2	Wheat	plastid	69.1	53.78
TraesCS4A01G336000.2	Wheat	nucleus	61.81	53.78
CDY06015	Canola	cytosol	52.43	53.17
Zm00001d034829_P001	Maize	mitochondrion	69.79	53.03
TraesCS4A01G336200.2	Wheat	plastid	68.06	52.97
TraesCS5B01G535800.1	Wheat	plastid	68.4	52.96
CDY06016	Canola	cytosol	48.96	52.81
TraesCS5D01G533100.1	Wheat	plastid	69.1	52.79
AT2G43120.2	Thale cress	nucleus	67.71	52.42
CDY57498	Canola	cytosol	50.35	52.16
HORVU5Hr1G120780.3	Barley	plastid	69.44	52.08
Bra007437.1-P	Field mustard	cytosol	35.42	52.04
CDY57499	Canola	cytoskeleton, cytosol, nucleus	54.51	50.81
PGSC0003DMT400057126	Potato	cytosol, mitochondrion, nucleus, plastid	50.0	48.32
Bra003367.1-P	Field mustard	cytosol	31.94	48.17
Zm00001d046171_P001	Maize	endoplasmic reticulum, mitochondrion, nucleus, plastid	32.99	47.26
Bra007438.1-P	Field mustard	cytosol	30.21	47.03
HORVU5Hr1G120800.4	Barley	plastid	69.79	45.27
TraesCS1B01G420000.1	Wheat	plastid	54.17	43.33
Os08t0364900-00	Rice	plastid	52.08	42.61
TraesCS1D01G400000.1	Wheat	plastid	52.78	42.22
TraesCS1A01G391900.1	Wheat	plastid	52.78	41.99
HORVU5Hr1G120810.1	Barley	plastid	32.99	38.15
EES14882	Sorghum	cytosol, plastid	49.65	37.83
HORVU1Hr1G086450.3	Barley	endoplasmic reticulum, plastid	51.39	37.19
Zm00001d032363_P001	Maize	cytosol	47.22	36.27
VIT_09s0096g00380.t01	Wine grape	nucleus	14.24	29.29

Protein Annotations

EntrezGene:102582065	Gene3D:2.60.120.10	MapMan:35.1	InterPro:IPR014710	UniProt:M1AV59	PFAM:PF02678
PFAM:PF05726	EnsemblPlantsGene:PGSC0003DMG400011902	PGSC:PGSC0003DMG400011902	EnsemblPlants:PGSC0003DMT400031070	PIRSF:PIRSF006232	PANTHER:PTHR13903
PANTHER:PTHR13903:SF5	InterPro:Pirin	InterPro:Pirin_C_dom	InterPro:Pirin_N_dom	InterPro:RmlC-like_jellyroll	InterPro:RmlC_Cupin_sf
SUPFAM:SSF51182	UniParc:UPI0002966144	RefSeq:XP_006366714.1	:	:	:

Description

Pirin [Source:PGSC_GENE;Acc:PGSC0003DMG400011902]

Coordinates

chr9:+:60918240..60920523

Molecular Weight (calculated)

32135.5 Da

IEP (calculated)

8.662

GRAVY (calculated)

-0.420

Length

288 amino acids

Sequence
(BLAST)

001: MSMSSRPRLV VKKVLARAQN EGDGAIVRRS IGRPELQNLD PFLMLDEFNV SPPAGFPDHP HRGFETVTYM LQGAFTHQDF AGHKGTIRTG DVQWMTAGRG
101: IVHSEMPVGP GTHKGLQLWI NLSSKNKMIE PRYQELLHQD IPKVEKDGVS VTILAGESMG IKSQVFTRTP TMYLDFTLKP GSEHHQRIPE TWNAFIYIVE
201: GEGAFGSSDS TTTPAHHCLV LGPGEGLSVW NKSSKPLRFV LIGGQPINEP VVQYGPFVMN TKSEIMQAYQ DYQLGKNGFE RSRQWCSK

Best Arabidopsis Sequence Match ( AT2G43120.2 )
(BLAST)

001: MAHNQFKDSL DPLSSINRHT ESQHQNTSKI RLLPRKATKK KKREEKTTLK YMRAAINRAN SLGGLFSFRF IRNIKSMSSS TSQDFVSRPV IKKVFAKLQK
101: EGDGAVVRRG ISRSEQKLLD PFLMLDEFSV SPPAGFPDHP HRGFETVTYV LEGGITHQDF KGHKGTIYAG DVQWMTAGRG IIHSEMPEEE VNKGLQLWIN
201: LSSNEKMIEP NYQELSHSDI PKAEQNGVEV KVIAGESMGI QSPVYTRTPT MFLDFTLQPG AQIHQNVPES WNAFAYILES GEGGGVFSSS NSSPIPAHSV
301: VVFGPGNDGV SVWNKSSSKQ LRFVLIAGEP IGEPVVQYGP FVMNTQAEID MTIEDYHYGK NGFEMAKYWR SQ

Arabidopsis Description

RmlC-like cupins superfamily protein [Source:TAIR;Acc:AT2G43120]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.