Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400031070 | |
| PGSC0003DMT400031088 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09030.1 | PGSC0003DMT400031070 | AT3G59220.1 | 17322342 |
| AT1G09030.1 | PGSC0003DMT400031088 | AT3G59220.1 | 17322342 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g099320.2.1 | Tomato | nucleus | 92.03 | 86.99 |
| VIT_14s0060g02660.t01 | Wine grape | nucleus | 67.39 | 63.27 |
| Bra018585.1-P | Field mustard | nucleus | 55.07 | 57.58 |
| CDX95014 | Canola | nucleus | 55.07 | 57.58 |
| KRH33913 | Soybean | nucleus | 57.97 | 56.74 |
| KRG92877 | Soybean | nucleus | 56.52 | 56.52 |
| PGSC0003DMT400029608 | Potato | nucleus | 55.8 | 53.85 |
| AT1G09030.1 | Thale cress | nucleus | 52.9 | 52.52 |
| PGSC0003DMT400058414 | Potato | nucleus | 50.72 | 51.47 |
| PGSC0003DMT400037958 | Potato | nucleus | 62.32 | 48.31 |
| GSMUA_Achr8P21910_001 | Banana | cytosol | 37.68 | 44.07 |
| PGSC0003DMT400082465 | Potato | nucleus | 41.3 | 43.18 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 36.23 | 41.67 |
| OQU88166 | Sorghum | cytosol, mitochondrion, nucleus | 42.75 | 40.41 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 18.84 | 39.39 |
| PGSC0003DMT400004366 | Potato | nucleus | 39.86 | 39.29 |
| TraesCS3A01G457000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 46.38 | 37.21 |
| HORVU3Hr1G098490.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 46.38 | 37.21 |
| PGSC0003DMT400095009 | Potato | nucleus | 50.72 | 36.65 |
| TraesCS3D01G450000.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 45.65 | 36.63 |
| Zm00001d042197_P001 | Maize | plastid | 42.03 | 34.94 |
| PGSC0003DMT400043176 | Potato | nucleus | 47.83 | 33.33 |
| PGSC0003DMT400057066 | Potato | nucleus | 44.2 | 32.97 |
| PGSC0003DMT400010977 | Potato | nucleus | 44.93 | 30.54 |
| PGSC0003DMT400035117 | Potato | nucleus | 37.68 | 29.05 |
| PGSC0003DMT400079574 | Potato | cytosol | 26.09 | 26.67 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 34.06 | 23.74 |
| PGSC0003DMT400035119 | Potato | nucleus | 26.09 | 22.36 |
| PGSC0003DMT400035125 | Potato | cytosol | 30.43 | 22.22 |
| PGSC0003DMT400057379 | Potato | nucleus | 26.81 | 21.39 |
| PGSC0003DMT400035129 | Potato | nucleus | 31.16 | 19.2 |
| PGSC0003DMT400059368 | Potato | cytosol | 20.29 | 18.06 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 20.29 | 17.72 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 20.29 | 17.61 |
| PGSC0003DMT400035028 | Potato | nucleus | 9.42 | 10.57 |
| PGSC0003DMT400035121 | Potato | nucleus | 9.42 | 8.44 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102604033 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1CB00 |
| PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400024745 | PGSC:PGSC0003DMG400024745 | EnsemblPlants:PGSC0003DMT400063671 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000295A03C | RefSeq:XP_006344838.1 |
| SEG:seg | : | : | : | : | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400024745]
Coordinates
chr1:-:77136896..77137312
Molecular Weight (calculated)
15994.9 Da
IEP (calculated)
4.654
GRAVY (calculated)
-0.726
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDEQVKLVP IANVGRIMKQ ILPPTAKISK EAKETMQECA SEFISFVTGE ASDKCQKENR RTVNGDDICW ALSSLGFDNY AEVMLRYLYK LRDFERVRAN
101: QNKLGLNEDD EDNRDDEEAP SAPLEFNIME RVQRRRFN
101: QNKLGLNEDD EDNRDDEEAP SAPLEFNIME RVQRRRFN
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
Arabidopsis Description
NFYB4Nuclear transcription factor Y subunit B-4 [Source:UniProtKB/Swiss-Prot;Acc:O04027]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.