Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g065500.1.1 | Tomato | nucleus | 95.14 | 96.7 |
| KRH73908 | Soybean | nucleus | 61.62 | 69.09 |
| PGSC0003DMT400004366 | Potato | nucleus | 48.11 | 63.57 |
| PGSC0003DMT400082465 | Potato | nucleus | 43.78 | 61.36 |
| VIT_19s0015g00440.t01 | Wine grape | nucleus | 67.03 | 59.05 |
| PGSC0003DMT400010977 | Potato | nucleus | 60.0 | 54.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.38 | 53.73 |
| PGSC0003DMT400058414 | Potato | nucleus | 38.92 | 52.94 |
| GSMUA_Achr6P35500_001 | Banana | nucleus | 40.54 | 52.82 |
| GSMUA_Achr8P05300_001 | Banana | nucleus | 42.16 | 50.98 |
| GSMUA_Achr9P09260_001 | Banana | nucleus | 48.11 | 50.86 |
| PGSC0003DMT400029608 | Potato | nucleus | 37.84 | 48.95 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 29.73 | 45.83 |
| PGSC0003DMT400063671 | Potato | nucleus | 32.97 | 44.2 |
| PGSC0003DMT400095009 | Potato | nucleus | 45.41 | 43.98 |
| PGSC0003DMT400037958 | Potato | nucleus | 40.0 | 41.57 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 14.59 | 40.91 |
| PGSC0003DMT400043176 | Potato | nucleus | 43.24 | 40.4 |
| PGSC0003DMT400035117 | Potato | nucleus | 35.68 | 36.87 |
| PGSC0003DMT400079574 | Potato | cytosol | 24.86 | 34.07 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 30.81 | 28.79 |
| PGSC0003DMT400035125 | Potato | cytosol | 28.11 | 27.51 |
| PGSC0003DMT400035119 | Potato | nucleus | 22.7 | 26.09 |
| PGSC0003DMT400057379 | Potato | nucleus | 23.24 | 24.86 |
| PGSC0003DMT400035129 | Potato | nucleus | 29.73 | 24.55 |
| PGSC0003DMT400059368 | Potato | cytosol | 20.54 | 24.52 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 20.54 | 24.05 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 20.0 | 23.27 |
| PGSC0003DMT400035028 | Potato | nucleus | 11.89 | 17.89 |
| PGSC0003DMT400035121 | Potato | nucleus | 14.05 | 16.88 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102584379 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1C0B3 |
| PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400022172 | PGSC:PGSC0003DMG400022172 | EnsemblPlants:PGSC0003DMT400057066 | PRINTS:PR00615 | ScanProsite:PS00685 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF9 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI0002955DF8 | RefSeq:XP_006346138.1 |
| RefSeq:XP_015163652.1 | SEG:seg | : | : | : | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400022172]
Coordinates
chr7:-:55488235..55489682
Molecular Weight (calculated)
20433.9 Da
IEP (calculated)
5.949
GRAVY (calculated)
-0.769
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSDNESGG HRENSNIESS LREQDRFLPI ANVSRIMKKA LPANAKISKD AKEVVQECVS EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEEYI
101: EPLKIYLQRF RDLEGQKSGI SGEKDNGGSV NIGGYVEDYH GMMMMGNQHH QGHGYGTGVY NHQTGENAAG VGTGGSRFPD VGRQR
101: EPLKIYLQRF RDLEGQKSGI SGEKDNGGSV NIGGYVEDYH GMMMMGNQHH QGHGYGTGVY NHQTGENAAG VGTGGSRFPD VGRQR
001: MADSDNDSGG HKDGGNASTR EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD KCQREKRKTI NGDDLLWAMT TLGFEDYVEP
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
101: LKVYLQKYRE VEGEKTTTAG RQGDKEGGGG GGGAGSGSGG APMYGGGMVT TMGHQFSHHF S
Arabidopsis Description
NFYB3Nuclear transcription factor Y subunit B-3 [Source:UniProtKB/Swiss-Prot;Acc:O23310]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.