Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g067130.2.1 | Tomato | plastid | 96.32 | 94.93 |
| KRH50875 | Soybean | nucleus | 64.71 | 72.73 |
| KRH02238 | Soybean | nucleus | 63.97 | 70.73 |
| KRH37126 | Soybean | nucleus | 57.35 | 66.67 |
| VIT_05s0020g01350.t01 | Wine grape | nucleus | 64.71 | 63.77 |
| KRH12126 | Soybean | nucleus | 64.71 | 61.11 |
| PGSC0003DMT400029608 | Potato | nucleus | 61.76 | 58.74 |
| PGSC0003DMT400082465 | Potato | nucleus | 52.21 | 53.79 |
| GSMUA_Achr5P17480_001 | Banana | nucleus | 60.29 | 50.93 |
| PGSC0003DMT400063671 | Potato | nucleus | 51.47 | 50.72 |
| PGSC0003DMT400004366 | Potato | nucleus | 50.74 | 49.29 |
| GSMUA_Achr11P... | Banana | nucleus | 59.56 | 48.8 |
| PGSC0003DMT400037958 | Potato | nucleus | 62.5 | 47.75 |
| GSMUA_Achr8P10020_001 | Banana | nucleus | 61.03 | 47.43 |
| Zm00001d042196_P001 | Maize | nucleus | 61.76 | 46.93 |
| Zm00001d011915_P001 | Maize | nucleus | 58.82 | 46.78 |
| Os01t0935200-01 | Rice | nucleus | 60.29 | 46.33 |
| EES04176 | Sorghum | nucleus | 61.76 | 46.15 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 39.71 | 45.0 |
| HORVU3Hr1G098500.1 | Barley | nucleus | 58.09 | 43.17 |
| TraesCSU01G203900.1 | Wheat | nucleus | 58.09 | 43.17 |
| TraesCSU01G051000.1 | Wheat | nucleus | 58.09 | 43.17 |
| TraesCSU01G050900.1 | Wheat | nucleus | 58.09 | 43.17 |
| TraesCS3D01G450100.1 | Wheat | nucleus | 58.09 | 42.93 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 20.59 | 42.42 |
| TraesCS3A01G457100.1 | Wheat | nucleus | 58.09 | 41.58 |
| PGSC0003DMT400057066 | Potato | nucleus | 52.94 | 38.92 |
| PGSC0003DMT400095009 | Potato | nucleus | 54.41 | 38.74 |
| PGSC0003DMT400010977 | Potato | nucleus | 54.41 | 36.45 |
| PGSC0003DMT400043176 | Potato | nucleus | 52.94 | 36.36 |
| PGSC0003DMT400079574 | Potato | cytosol | 33.09 | 33.33 |
| PGSC0003DMT400035117 | Potato | nucleus | 42.65 | 32.4 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 41.91 | 28.79 |
| PGSC0003DMT400035119 | Potato | nucleus | 30.88 | 26.09 |
| PGSC0003DMT400035125 | Potato | cytosol | 36.03 | 25.93 |
| PGSC0003DMT400057379 | Potato | nucleus | 29.41 | 23.12 |
| PGSC0003DMT400035129 | Potato | nucleus | 36.03 | 21.88 |
| PGSC0003DMT400059368 | Potato | cytosol | 24.26 | 21.29 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 23.53 | 20.25 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 23.53 | 20.13 |
| PGSC0003DMT400035028 | Potato | nucleus | 13.97 | 15.45 |
| PGSC0003DMT400035121 | Potato | nucleus | 13.97 | 12.34 |
Protein Annotations
| Gene3D:1.10.20.10 | EntrezGene:102604580 | MapMan:15.5.51.2 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M1C2L2 | PFAM:PF00808 | EnsemblPlantsGene:PGSC0003DMG400022680 | PGSC:PGSC0003DMG400022680 |
| EnsemblPlants:PGSC0003DMT400058414 | PRINTS:PR00615 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | UniParc:UPI0002948DFB |
| RefSeq:XP_006342784.1 | : | : | : | : | : |
Description
Ccaat-binding transcription factor subunit A [Source:PGSC_GENE;Acc:PGSC0003DMG400022680]
Coordinates
chr1:+:58347143..58347640
Molecular Weight (calculated)
14928.3 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.887
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQNIGGAS SSNDEGAGSS REQDRLLPIA NVGRIMKNIL PPNAKISKEA KETMQECVSE FIGFVTSEAS DKCRKERRKT VNGDDVCWAL GTLGFDDYGG
101: ALKRYLHRYR ESEGEKVNQE QAGGGSGSHQ PRNYLD
101: ALKRYLHRYR ESEGEKVNQE QAGGGSGSHQ PRNYLD
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Arabidopsis Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.