Factsheet for PGSC0003DMT400034611

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012750.1.1	Tomato	nucleus	67.5	53.29
PGSC0003DMT400035117	Potato	nucleus	68.33	45.81
PGSC0003DMT400079574	Potato	cytosol	50.0	44.44
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	22.5	40.91
VIT_00s0956g00020.t01	Wine grape	nucleus	71.67	40.76
PGSC0003DMT400029608	Potato	nucleus	47.5	39.86
PGSC0003DMT400058414	Potato	nucleus	45.0	39.71
CDY25952	Canola	nucleus	68.33	39.61
CDY41063	Canola	nucleus	67.5	38.76
KRH51197	Soybean	nucleus	71.67	38.56
Bra017471.1-P	Field mustard	nucleus	65.83	37.8
KRH01950	Soybean	nucleus	70.83	37.61
PGSC0003DMT400004366	Potato	nucleus	42.5	36.43
PGSC0003DMT400082465	Potato	nucleus	40.0	36.36
PGSC0003DMT400063671	Potato	nucleus	41.67	36.23
Bra024924.1-P	Field mustard	nucleus	69.17	35.93
CDY17715	Canola	nucleus	69.17	35.93
GSMUA_Achr3P04310_001	Banana	nucleus	62.5	35.38
AT5G47670.3	Thale cress	nucleus	68.33	35.04
PGSC0003DMT400035119	Potato	nucleus	45.0	33.54
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	55.0	33.33
PGSC0003DMT400035125	Potato	cytosol	51.67	32.8
PGSC0003DMT400037958	Potato	nucleus	45.0	30.34
PGSC0003DMT400057066	Potato	nucleus	45.83	29.73
PGSC0003DMT400035129	Potato	nucleus	51.67	27.68
PGSC0003DMT400035028	Potato	nucleus	28.33	27.64
PGSC0003DMT400010977	Potato	nucleus	45.83	27.09
PGSC0003DMT400095009	Potato	nucleus	42.5	26.7
PGSC0003DMT400057379	Potato	nucleus	37.5	26.01
PGSC0003DMT400043176	Potato	nucleus	42.5	25.76
PGSC0003DMT400059368	Potato	cytosol	26.67	20.65
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	25.83	19.62
PGSC0003DMT400035121	Potato	nucleus	25.0	19.48
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	25.0	18.87

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1B104	PFAM:PF00808
EnsemblPlantsGene:PGSC0003DMG400013302	PGSC:PGSC0003DMG400013302	EnsemblPlants:PGSC0003DMT400034611	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF20	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000296DE3B	SEG:seg	:

Description

Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013302]

Coordinates

chr11:-:203348..203982

Molecular Weight (calculated)

13825.7 Da

IEP (calculated)

7.674

GRAVY (calculated)

-0.455

Length

120 amino acids

Sequence
(BLAST)

001: MPIANVIRVM RRILPPRAKI SDDSKQTIQE CVSEFISFVT GEANERCQRK TITAEDVLWA MSKLGFDDYI EPLTFYLHRY REFDGGERVT LRGEKRPMLD
101: HLLPPIAHHH AGPPPMASQH

Best Arabidopsis Sequence Match ( AT5G47670.2 )
(BLAST)

001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY

Arabidopsis Description

NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.