Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17715 | Canola | nucleus | 100.0 | 100.0 |
| Bra017471.1-P | Field mustard | nucleus | 75.76 | 83.73 |
| AT5G47670.3 | Thale cress | nucleus | 84.42 | 83.33 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 35.93 | 69.17 |
| Solyc11g012750.1.1 | Tomato | nucleus | 43.29 | 65.79 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 53.25 | 58.29 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 15.15 | 53.03 |
| KRH51197 | Soybean | nucleus | 51.08 | 52.91 |
| KRH01950 | Soybean | nucleus | 51.08 | 52.21 |
| PGSC0003DMT400035117 | Potato | nucleus | 39.39 | 50.84 |
| Bra012301.1-P | Field mustard | nucleus | 43.72 | 50.5 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 45.02 | 49.06 |
| Bra031356.1-P | Field mustard | nucleus | 44.59 | 48.13 |
| Solyc04g015060.1.1 | Tomato | nucleus | 49.35 | 48.1 |
| PGSC0003DMT400079574 | Potato | cytosol | 27.71 | 47.41 |
| Bra005074.1-P | Field mustard | nucleus | 29.0 | 47.18 |
| Bra021147.1-P | Field mustard | nucleus | 30.74 | 45.22 |
| Bra017473.1-P | Field mustard | nucleus | 33.33 | 41.85 |
| Bra018585.1-P | Field mustard | nucleus | 23.81 | 41.67 |
| Bra006991.1-P | Field mustard | nucleus | 32.03 | 41.57 |
| Bra022147.1-P | Field mustard | nucleus | 33.33 | 41.4 |
| Bra027199.1-P | Field mustard | nucleus | 30.3 | 41.18 |
| Bra000462.1-P | Field mustard | nucleus | 27.71 | 41.03 |
| PGSC0003DMT400035125 | Potato | cytosol | 32.9 | 40.21 |
| Bra017209.1-P | Field mustard | nucleus | 32.9 | 39.79 |
| Solyc05g005440.1.1 | Tomato | cytosol | 35.5 | 39.42 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 33.77 | 39.39 |
| Bra004428.1-P | Field mustard | nucleus | 25.97 | 38.71 |
| Bra001615.1-P | Field mustard | nucleus | 31.6 | 38.62 |
| Bra023095.1-P | Field mustard | nucleus | 32.9 | 38.0 |
| PGSC0003DMT400035119 | Potato | nucleus | 26.41 | 37.89 |
| PGSC0003DMT400035129 | Potato | nucleus | 36.36 | 37.5 |
| Solyc05g015550.1.1 | Tomato | mitochondrion | 32.03 | 33.79 |
| PGSC0003DMT400035028 | Potato | nucleus | 17.75 | 33.33 |
| Solyc05g005350.1.1 | Tomato | nucleus | 31.17 | 32.88 |
| Solyc05g005360.1.1 | Tomato | nucleus | 31.17 | 32.14 |
| Bra013143.1-P | Field mustard | nucleus | 29.0 | 32.06 |
| Bra037211.1-P | Field mustard | nucleus | 28.57 | 31.73 |
| Solyc05g005370.1.1 | Tomato | nucleus | 30.3 | 31.25 |
| Bra016397.1-P | Field mustard | cytosol | 25.97 | 31.25 |
| PGSC0003DMT400035121 | Potato | nucleus | 19.91 | 29.87 |
| Solyc05g005380.1.1 | Tomato | plastid | 43.72 | 28.29 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 16.45 | 22.89 |
| Bra035959.1-P | Field mustard | cytosol, nucleus, plastid | 16.45 | 22.62 |
| Solyc05g005340.2.1 | Tomato | extracellular | 12.12 | 22.58 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 14.72 | 22.22 |
| Solyc02g032180.1.1 | Tomato | nucleus | 19.91 | 16.03 |
| Bra028668.1-P | Field mustard | nucleus | 11.69 | 14.06 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EnsemblPlantsGene:Bra024924 | EnsemblPlants:Bra024924.1 | EnsemblPlants:Bra024924.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold |
| InterPro:IPR009072 | UniProt:M4E818 | PFAM:PF00808 | PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 |
| PANTHER:PTHR11064:SF79 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS | UniParc:UPI000253FA7E | : | : |
Description
AT5G47670 (E=9e-113) NF-YB6 | NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6); transcription activator/ transcription activator binding / transcription factor
Coordinates
chrA06:-:24273144..24273981
Molecular Weight (calculated)
25911.5 Da
IEP (calculated)
6.630
GRAVY (calculated)
-0.723
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MERGGFHGYR KFSLNTTNPS EPAKFLMAEG SMQLSEPNQT NKTANGGEEE CTVREQDRFM PIANVIRIMR RILPAHAKIS DDSKETIQEC VSEYISFITG
101: EANERCQREQ RKTITAEDVL WAMSKLGFDD YIEPLTLYLH RYRELEGDRG VGYNTGSVGM TSGMVVKRPN GAMAEYGAYG VVPGMHMAPY HYRHQNGYGY
201: SGNEPDSKMG GPSSAANGSR VELFPTQQHK Y
101: EANERCQREQ RKTITAEDVL WAMSKLGFDD YIEPLTLYLH RYRELEGDRG VGYNTGSVGM TSGMVVKRPN GAMAEYGAYG VVPGMHMAPY HYRHQNGYGY
201: SGNEPDSKMG GPSSAANGSR VELFPTQQHK Y
001: MERGGFHGYR KLSVNNTTPS PPGLAANFLM AEGSMRPPEF NQPNKTSNGG EEECTVREQD RFMPIANVIR IMRRILPAHA KISDDSKETI QECVSEYISF
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
101: ITGEANERCQ REQRKTITAE DVLWAMSKLG FDDYIEPLTL YLHRYRELEG ERGVSCSAGS VSMTNGLVVK RPNGTMTEYG AYGPVPGIHM AQYHYRHQNG
201: FVFSGNEPNS KMSGSSSGAS GARVEVFPTQ QHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.