Factsheet for Bra000462.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008669.1-P
Bra010908.1-P
Bra030070.1-P
Bra041077.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47810.1	Bra010908.1-P	AT1G28050.1	17138697
AT2G47810.1	Bra030070.1-P	AT1G28050.1	17138697
AT2G47810.1	Bra041077.1-P	AT1G28050.1	17138697
AT2G47810.1	Bra008669.1-P	AT5G15840.1	17138697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83320	Canola	nucleus	100.0	100.0
Bra004428.1-P	Field mustard	nucleus	85.26	85.81
AT2G47810.1	Thale cress	nucleus	85.26	83.12
Solyc09g074760.1.1	Tomato	nucleus	53.85	60.87
PGSC0003DMT400029608	Potato	nucleus	53.21	58.04
Bra018585.1-P	Field mustard	nucleus	45.51	53.79
Bra005074.1-P	Field mustard	nucleus	44.87	49.3
Bra021147.1-P	Field mustard	nucleus	48.08	47.77
Bra027199.1-P	Field mustard	nucleus	48.08	44.12
Bra022147.1-P	Field mustard	nucleus	50.0	41.94
Bra017473.1-P	Field mustard	nucleus	49.36	41.85
Bra006991.1-P	Field mustard	nucleus	46.15	40.45
Bra001615.1-P	Field mustard	nucleus	48.08	39.68
Bra017209.1-P	Field mustard	nucleus	45.51	37.17
Bra013143.1-P	Field mustard	nucleus	49.36	36.84
Bra037211.1-P	Field mustard	nucleus	47.44	35.58
Bra023095.1-P	Field mustard	nucleus	45.51	35.5
Bra017471.1-P	Field mustard	nucleus	42.31	31.58
Bra012301.1-P	Field mustard	nucleus	39.74	31.0
Bra031356.1-P	Field mustard	nucleus	40.38	29.44
Bra024924.1-P	Field mustard	nucleus	41.03	27.71
Bra016397.1-P	Field mustard	cytosol	33.33	27.08
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	21.79	20.24
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	19.23	19.61
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	20.51	19.28
Bra028668.1-P	Field mustard	nucleus	14.74	11.98

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra000462	EnsemblPlants:Bra000462.1	EnsemblPlants:Bra000462.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4C8D4	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00019AA826	:	:

Description

AT2G47810 (E=8e-075) NF-YB5 | NF-YB5 (NUCLEAR FACTOR Y, SUBUNIT B5); transcription factor

Coordinates

chrA03:-:11221275..11221745

Molecular Weight (calculated)

17902.0 Da

IEP (calculated)

6.880

GRAVY (calculated)

-0.900

Length

156 amino acids

Sequence
(BLAST)

001: MAGNYHSFEN PIHRFKNYNF GSSSSHHQNH DGLLVEDQQQ EENMMIKEQD RLLPIANVGR IMKNILPPNA KISKEAKETM QECVSEFISF VTGEASDKCH
101: KEKRKTVNGD DICWAMANLG FDDYAEQLRK YLNRYRVIEG ERANHGRGAK LSSPDN

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.