Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53021 | Canola | nucleus | 84.38 | 87.1 |
| CDX83320 | Canola | nucleus | 83.12 | 85.26 |
| Bra000462.1-P | Field mustard | nucleus | 83.12 | 85.26 |
| Bra004428.1-P | Field mustard | nucleus | 81.88 | 84.52 |
| CDX80136 | Canola | nucleus | 83.12 | 77.33 |
| Solyc09g074760.1.1 | Tomato | nucleus | 53.75 | 62.32 |
| PGSC0003DMT400029608 | Potato | nucleus | 53.75 | 60.14 |
| AT1G09030.1 | Thale cress | nucleus | 42.5 | 48.92 |
| AT4G14540.1 | Thale cress | nucleus | 46.25 | 45.96 |
| AT2G38880.8 | Thale cress | nucleus | 45.0 | 43.9 |
| AT3G53340.5 | Thale cress | nucleus | 47.5 | 43.18 |
| AT2G37060.2 | Thale cress | nucleus | 46.25 | 42.77 |
| AT5G47640.1 | Thale cress | nucleus | 47.5 | 40.0 |
| AT2G13570.1 | Thale cress | nucleus | 49.38 | 36.74 |
| AT5G47670.3 | Thale cress | nucleus | 40.62 | 27.78 |
| AT1G21970.1 | Thale cress | nucleus | 36.25 | 24.37 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 21.25 | 21.38 |
| AT5G08190.1 | Thale cress | cytosol, nucleus, plastid | 20.62 | 20.25 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EntrezGene:819393 | UniProt:A0A178VUG0 | ProteinID:AAC63635.1 | ProteinID:AEC10890.1 |
| ArrayExpress:AT2G47810 | EnsemblPlantsGene:AT2G47810 | RefSeq:AT2G47810 | TAIR:AT2G47810 | RefSeq:AT2G47810-TAIR-G | EnsemblPlants:AT2G47810.1 |
| TAIR:AT2G47810.1 | Unigene:At.36317 | EMBL:BT003968 | EMBL:BT005081 | InterPro:CBFA_NFYB_domain | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | GO:GO:0046982 |
| InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB5 | RefSeq:NP_182302.1 | UniProt:O82248 | ProteinID:OAP09031.1 |
| PFAM:PF00808 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0025281 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF88 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI000000C20D | SEG:seg | : | : | : | : |
Description
NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
Coordinates
chr2:-:19582658..19583618
Molecular Weight (calculated)
18123.3 Da
IEP (calculated)
6.953
GRAVY (calculated)
-0.870
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.