Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69967 | Canola | cytosol, nucleus, plastid | 92.64 | 91.52 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 92.64 | 90.96 |
| AT5G23090.1 | Thale cress | cytosol, nucleus, plastid | 88.34 | 90.57 |
| CDY21520 | Canola | cytosol, nucleus, plastid | 92.02 | 90.36 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 84.66 | 90.2 |
| KRH56716 | Soybean | cytosol, mitochondrion, nucleus | 81.6 | 84.71 |
| KRH03842 | Soybean | cytosol, mitochondrion, nucleus | 81.6 | 83.12 |
| KRH54787 | Soybean | cytosol, mitochondrion, nucleus | 78.53 | 82.05 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 79.14 | 81.65 |
| GSMUA_Achr1P20700_001 | Banana | cytosol | 26.38 | 81.13 |
| VIT_17s0000g04350.t01 | Wine grape | cytosol, mitochondrion, nucleus | 76.69 | 80.65 |
| Solyc06g069310.2.1 | Tomato | cytosol, mitochondrion, nucleus | 63.8 | 79.39 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 76.69 | 78.62 |
| PGSC0003DMT400059368 | Potato | cytosol | 74.23 | 78.06 |
| KRH62965 | Soybean | cytosol, nucleus | 49.69 | 75.7 |
| Solyc03g114400.2.1 | Tomato | cytosol, nucleus, plastid | 60.74 | 75.0 |
| GSMUA_Achr1P20710_001 | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 51.53 | 71.19 |
| GSMUA_Achr9P00790_001 | Banana | cytosol, nucleus, peroxisome | 71.17 | 67.05 |
| CDY44761 | Canola | cytosol | 92.02 | 62.5 |
| CDY40760 | Canola | nucleus | 88.96 | 58.47 |
| Bra028668.1-P | Field mustard | nucleus | 58.9 | 50.0 |
| TraesCS3A01G450700.1 | Wheat | cytosol, mitochondrion, nucleus | 72.39 | 40.55 |
| TraesCS3B01G487800.1 | Wheat | cytosol, mitochondrion, nucleus | 72.39 | 39.86 |
| TraesCS3D01G443500.1 | Wheat | cytosol, mitochondrion, nucleus | 72.39 | 39.6 |
| Zm00001d050242_P002 | Maize | plastid | 71.17 | 39.06 |
| EES13767 | Sorghum | nucleus | 71.17 | 39.06 |
| Zm00001d032328_P005 | Maize | extracellular, plastid | 71.17 | 38.54 |
| HORVU3Hr1G097680.4 | Barley | cytosol, mitochondrion, nucleus | 70.55 | 37.46 |
| AT4G14540.1 | Thale cress | nucleus | 23.93 | 24.22 |
| AT2G38880.8 | Thale cress | nucleus | 23.31 | 23.17 |
| AT1G09030.1 | Thale cress | nucleus | 19.02 | 22.3 |
| AT2G37060.2 | Thale cress | nucleus | 23.31 | 21.97 |
| Os08t0383700-02 | Rice | cytosol, extracellular | 33.13 | 21.77 |
| AT5G47640.1 | Thale cress | nucleus | 24.54 | 21.05 |
| AT2G47810.1 | Thale cress | nucleus | 20.25 | 20.62 |
| AT3G53340.5 | Thale cress | nucleus | 21.47 | 19.89 |
| AT2G13570.1 | Thale cress | nucleus | 22.09 | 16.74 |
| AT5G47670.3 | Thale cress | nucleus | 22.7 | 15.81 |
| AT1G21970.1 | Thale cress | nucleus | 20.86 | 14.29 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.7.1.2 | EntrezGene:830715 | UniProt:A0A178UHP2 | ProteinID:AED91268.1 | EMBL:AF428400 |
| EMBL:AK227164 | ArrayExpress:AT5G08190 | EnsemblPlantsGene:AT5G08190 | RefSeq:AT5G08190 | TAIR:AT5G08190 | RefSeq:AT5G08190-TAIR-G |
| EnsemblPlants:AT5G08190.1 | TAIR:AT5G08190.1 | EMBL:AY087017 | EMBL:AY125544 | Unigene:At.23541 | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | Symbol:NF-YB12 |
| RefSeq:NP_568190.1 | ProteinID:OAO93303.1 | PFAM:PF00808 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR11064 | PANTHER:PTHR11064:SF8 | UniProt:Q944I5 | SUPFAM:SSF47113 | UniParc:UPI00000AB76B | SEG:seg |
Description
NF-YB12NF-YB12 [Source:UniProtKB/TrEMBL;Acc:A0A178UHP2]
Coordinates
chr5:+:2635832..2637433
Molecular Weight (calculated)
18357.7 Da
IEP (calculated)
4.296
GRAVY (calculated)
-0.625
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL EEPQQQQQTS LQS
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL EEPQQQQQTS LQS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.