Factsheet for Bra028668.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40760	Canola	nucleus	98.44	76.21
AT5G08190.1	Thale cress	cytosol, nucleus, plastid	50.0	58.9
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	46.88	58.82
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	49.48	57.23
KRH56716	Soybean	cytosol, mitochondrion, nucleus	46.35	56.69
GSMUA_Achr1P20700_001	Banana	cytosol	15.62	56.6
KRH03842	Soybean	cytosol, mitochondrion, nucleus	45.83	55.0
Solyc06g069310.2.1	Tomato	cytosol, mitochondrion, nucleus	36.98	54.2
KRH54787	Soybean	cytosol, mitochondrion, nucleus	43.75	53.85
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	46.88	53.57
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	43.75	53.16
Solyc03g114400.2.1	Tomato	cytosol, nucleus, plastid	36.46	53.03
VIT_17s0000g04350.t01	Wine grape	cytosol, mitochondrion, nucleus	42.71	52.9
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	43.23	52.2
PGSC0003DMT400059368	Potato	cytosol	40.62	50.32
KRH62965	Soybean	cytosol, nucleus	27.6	49.53
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.65	46.61
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	41.15	45.66
TraesCS3A01G450700.1	Wheat	cytosol, mitochondrion, nucleus	39.06	25.77
Zm00001d050242_P002	Maize	plastid	39.58	25.59
EES13767	Sorghum	nucleus	39.58	25.59
TraesCS3B01G487800.1	Wheat	cytosol, mitochondrion, nucleus	39.06	25.34
TraesCS3D01G443500.1	Wheat	cytosol, mitochondrion, nucleus	39.06	25.17
Zm00001d032328_P005	Maize	extracellular, plastid	39.06	24.92
HORVU3Hr1G097680.4	Barley	cytosol, mitochondrion, nucleus	37.5	23.45
Bra005074.1-P	Field mustard	nucleus	15.1	20.42
Bra021147.1-P	Field mustard	nucleus	14.06	17.2
Bra027199.1-P	Field mustard	nucleus	15.1	17.06
Bra006991.1-P	Field mustard	nucleus	15.62	16.85
Bra018585.1-P	Field mustard	nucleus	11.46	16.67
Bra017473.1-P	Field mustard	nucleus	15.1	15.76
Bra022147.1-P	Field mustard	nucleus	15.1	15.59
Bra001615.1-P	Field mustard	nucleus	15.1	15.34
Bra017209.1-P	Field mustard	nucleus	15.1	15.18
Bra000462.1-P	Field mustard	nucleus	11.98	14.74
Bra004428.1-P	Field mustard	nucleus	10.94	13.55
Bra023095.1-P	Field mustard	nucleus	14.06	13.5
Bra012301.1-P	Field mustard	nucleus	14.06	13.5
Bra031356.1-P	Field mustard	nucleus	14.58	13.08
Bra017471.1-P	Field mustard	nucleus	14.06	12.92
Bra013143.1-P	Field mustard	nucleus	14.06	12.92
Bra037211.1-P	Field mustard	nucleus	13.02	12.02
Bra024924.1-P	Field mustard	nucleus	14.06	11.69
Bra016397.1-P	Field mustard	cytosol	10.94	10.94
Os08t0383700-02	Rice	cytosol, extracellular	11.98	9.27

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.7.1.2	EnsemblPlantsGene:Bra028668	EnsemblPlants:Bra028668.1	EnsemblPlants:Bra028668.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M4EIQ3	PFAM:PF00808
PANTHER:PTHR11064	PANTHER:PTHR11064:SF8	SUPFAM:SSF47113	UniParc:UPI0002543268	:	:

Description

AT5G23090 (E=2e-046) NF-YB13 | NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13); transcription factor

Coordinates

chrA02:+:2629282..2631094

Molecular Weight (calculated)

22308.9 Da

IEP (calculated)

8.600

GRAVY (calculated)

-0.560

Length

192 amino acids

Sequence
(BLAST)

001: MHNNTVRLEK EQSYKKILYA LKELKWRIHA HFFIHGTKTE NNIIGPLFGQ SQTKKGTYKM NQHNVIHGTS NLPLSFIIVF KLRFCREIKT MDLVGKSKED
101: ASLPKGDVRV ARDAQDLLIE CCVEFINLIS SESNEVCNKE DKRTIAPEHV LKALQVLGFG EYVEEVYSAY EQHKYETMQD SQRSVKMTQE QR

Best Arabidopsis Sequence Match ( AT5G08190.1 )
(BLAST)

001: MDPMDIVGKS KEDASLPKAT MTKIIKEMLP ADVRVARDAQ DLLIECCVEF INLISSESNE VCNKEDKRTI APEHVLKALQ VLGFGEYVEE VYAAYEQHKY
101: ETMQDSQRSV KMNSGAEMTE EEAAAEQQRM FAEARARMNG GVTVPQPEQL EEPQQQQQTS LQS

Arabidopsis Description

NF-YB12NF-YB12 [Source:UniProtKB/TrEMBL;Acc:A0A178UHP2]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.