Factsheet for Bra013143.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra034756.1-P
Bra038724.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G13570.1	Bra034756.1-P	AT3G12480.1	21798944
AT2G13570.1	Bra038724.1-P	AT3G12480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93117	Canola	nucleus	100.0	100.0
CDX89608	Canola	nucleus	99.52	99.52
Bra037211.1-P	Field mustard	nucleus	90.91	91.35
AT2G13570.1	Thale cress	nucleus	89.0	86.51
PGSC0003DMT400043176	Potato	nucleus	55.5	58.59
Bra021147.1-P	Field mustard	nucleus	43.06	57.32
Bra005074.1-P	Field mustard	nucleus	36.84	54.23
Bra027199.1-P	Field mustard	nucleus	44.02	54.12
Solyc12g027650.1.1	Tomato	nucleus	53.11	53.37
KRH59594	Soybean	nucleus	51.2	51.69
Bra018585.1-P	Field mustard	nucleus	32.54	51.52
KRH40945	Soybean	nucleus	53.59	50.68
Bra017473.1-P	Field mustard	nucleus	43.54	49.46
Bra000462.1-P	Field mustard	nucleus	36.84	49.36
Bra022147.1-P	Field mustard	nucleus	42.58	47.85
Bra006991.1-P	Field mustard	nucleus	40.67	47.75
Bra004428.1-P	Field mustard	nucleus	35.41	47.74
Bra001615.1-P	Field mustard	nucleus	43.06	47.62
Bra023095.1-P	Field mustard	nucleus	41.63	43.5
Bra017209.1-P	Field mustard	nucleus	39.23	42.93
Bra012301.1-P	Field mustard	nucleus	32.54	34.0
Bra031356.1-P	Field mustard	nucleus	33.49	32.71
Bra017471.1-P	Field mustard	nucleus	32.54	32.54
Bra024924.1-P	Field mustard	nucleus	32.06	29.0
Bra016397.1-P	Field mustard	cytosol	24.88	27.08
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	17.7	22.29
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	16.27	22.22
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	17.22	21.43
Bra028668.1-P	Field mustard	nucleus	12.92	14.06

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra013143	EnsemblPlants:Bra013143.1	EnsemblPlants:Bra013143.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4D9I3	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00025409F0	SEG:seg	:

Description

AT2G13570 (E=5e-084) NF-YB7 | NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7); transcription factor

Coordinates

chrA03:-:20219243..20219872

Molecular Weight (calculated)

23902.5 Da

IEP (calculated)

6.232

GRAVY (calculated)

-1.107

Length

209 amino acids

Sequence
(BLAST)

001: MTEESPEEDH ESPGVAETNL GSPSSKNNNN NNNKEQDRFL PIANVGRIMK KVLPGNGKIS KDAKETVQEC VSEFISFVTG EASDKCQREK RKTINGDDII
101: WAITTLGFED YVAPLKVYLN KYRETEGEKT NSPKQRQQQQ VQQNHHFQFQ EQDHNNISCT SYMSHHHPST FFPADHQPFP NLPFSPKSLQ KQFPQQQHDN
201: TDSIGQWSV

Best Arabidopsis Sequence Match ( AT2G13570.1 )
(BLAST)

001: MTEESPEEDH GSPGVAETNP GSPSSKTNNN NNNNKEQDRF LPIANVGRIM KKVLPGNGKI SKDAKETVQE CVSEFISFVT GEASDKCQRE KRKTINGDDI
101: IWAITTLGFE DYVAPLKVYL CKYRDTEGEK VNSPKQQQQR QQQQQIQQQN HHNYQFQEQD QNNNNMSCTS YISHHHPSPF LPVDHQPFPN IAFSPKSLQK
201: QFPQQHDNNI DSIHW

Arabidopsis Description

NFYB7Uncharacterized protein At2g13570 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV44]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.