Factsheet for Bra017209.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18460	Canola	nucleus	100.0	98.45
CDY72254	Canola	nucleus	94.24	96.77
CDY18462	Canola	nucleus	84.29	92.0
AT2G37060.2	Thale cress	nucleus	72.25	79.77
Bra006991.1-P	Field mustard	nucleus	69.11	74.16
Bra023095.1-P	Field mustard	nucleus	77.49	74.0
PGSC0003DMT400004366	Potato	nucleus	53.4	72.86
Solyc09g007290.2.1	Tomato	nucleus	47.64	70.54
VIT_08s0040g03260.t01	Wine grape	nucleus	59.16	70.19
Bra005074.1-P	Field mustard	nucleus	48.17	64.79
Zm00001d038397_P005	Maize	nucleus	58.64	62.92
GSMUA_Achr8P17450_001	Banana	nucleus	63.35	62.37
TraesCS7A01G486400.1	Wheat	cytosol	34.55	62.26
KXG22176	Sorghum	nucleus	58.64	62.22
TraesCS7B01G501400.1	Wheat	cytoskeleton, cytosol, nucleus	36.65	61.4
Bra021147.1-P	Field mustard	nucleus	49.21	59.87
Os05t0463800-02	Rice	nucleus	57.59	59.46
TraesCS5B01G454900.1	Wheat	cytoskeleton, cytosol, nucleus	37.17	58.2
Zm00001d010574_P001	Maize	nucleus	56.54	57.75
TraesCS1D01G287500.1	Wheat	nucleus	54.45	57.14
TraesCS1A01G288500.3	Wheat	nucleus	54.45	57.14
TraesCS1B01G297900.2	Wheat	nucleus	53.93	56.59
Bra027199.1-P	Field mustard	nucleus	47.64	53.53
Bra017473.1-P	Field mustard	nucleus	49.74	51.63
Bra022147.1-P	Field mustard	nucleus	48.69	50.0
Bra001615.1-P	Field mustard	nucleus	48.17	48.68
Bra000462.1-P	Field mustard	nucleus	37.17	45.51
Bra018585.1-P	Field mustard	nucleus	30.89	44.7
Bra004428.1-P	Field mustard	nucleus	35.08	43.23
HORVU1Hr1G071620.5	Barley	nucleus, plastid	54.45	41.27
Bra013143.1-P	Field mustard	nucleus	42.93	39.23
Bra037211.1-P	Field mustard	nucleus	42.41	38.94
Bra017471.1-P	Field mustard	nucleus	39.27	35.89
Bra024924.1-P	Field mustard	nucleus	39.79	32.9
Bra012301.1-P	Field mustard	nucleus	34.03	32.5
Bra031356.1-P	Field mustard	nucleus	34.55	30.84
Bra016397.1-P	Field mustard	cytosol	27.75	27.6
Bra035959.1-P	Field mustard	cytosol, nucleus, plastid	21.47	24.4
Bra005976.1-P	Field mustard	cytosol, nucleus, plastid	19.37	24.18
Bra009328.1-P	Field mustard	cytosol, nucleus, plastid	20.94	24.1
Bra028668.1-P	Field mustard	nucleus	15.18	15.1

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	EnsemblPlantsGene:Bra017209	EnsemblPlants:Bra017209.1	EnsemblPlants:Bra017209.1-P	InterPro:CBFA_NFYB_domain
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4DL28	PFAM:PF00808	PRINTS:PR00615	ScanProsite:PS00685	PANTHER:PTHR11064
PANTHER:PTHR11064:SF85	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI000254442F	:	:

Description

AT2G37060 (E=4e-072) NF-YB8 | NF-YB8 (NUCLEAR FACTOR Y, SUBUNIT B8); transcription factor

Coordinates

chrA04:+:16035831..16037300

Molecular Weight (calculated)

21066.6 Da

IEP (calculated)

8.230

GRAVY (calculated)

-0.675

Length

191 amino acids

Sequence
(BLAST)

001: MAESQTKSPG DHVSGGDQSP RSSSHVREQD RFLPIANISR IMKRGLPANG KIAKDAKEIL QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG
101: FEEYIEPLKL YLTRYREGDS KGSARGGDIA NAKRDGQSSQ NGQFSQLAHQ GSYPQGPYGN SQVTFPLLLF HTHSEYVSAT HLTTQIISSA K

Best Arabidopsis Sequence Match ( AT2G37060.2 )
(BLAST)

001: MAESQAKSPG GCGSHESGGD QSPRSLHVRE QDRFLPIANI SRIMKRGLPA NGKIAKDAKE IVQECVSEFI SFVTSEASDK CQREKRKTIN GDDLLWAMAT
101: LGFEDYMEPL KVYLMRYREM EGDTKGSAKG GDPNAKKDGQ SSQNGQFSQL AHQGPYGNSQ AQQHMMVPMP GTD

Arabidopsis Description

NFYB8Nuclear transcription factor Y subunit B-8 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.