Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74880 | Canola | nucleus | 99.3 | 99.3 |
| AT2G38880.8 | Thale cress | nucleus | 93.66 | 81.1 |
| CDY07691 | Canola | nucleus | 89.44 | 76.51 |
| Solyc04g009520.2.1 | Tomato | nucleus | 43.66 | 72.09 |
| CDY14422 | Canola | nucleus | 81.69 | 70.73 |
| PGSC0003DMT400082465 | Potato | nucleus | 60.56 | 65.15 |
| CDX91501 | Canola | nucleus | 96.48 | 64.62 |
| TraesCS7A01G486400.1 | Wheat | cytosol | 45.77 | 61.32 |
| Solyc04g049910.2.1 | Tomato | nucleus | 71.13 | 61.21 |
| VIT_13s0019g03600.t01 | Wine grape | nucleus | 75.35 | 60.8 |
| KRH34567 | Soybean | nucleus | 73.94 | 60.34 |
| KRG92229 | Soybean | nucleus | 73.24 | 60.12 |
| KXG22176 | Sorghum | nucleus | 73.24 | 57.78 |
| Zm00001d038397_P005 | Maize | nucleus | 71.83 | 57.3 |
| TraesCS7B01G501400.1 | Wheat | cytoskeleton, cytosol, nucleus | 45.07 | 56.14 |
| TraesCS1D01G287500.1 | Wheat | nucleus | 71.83 | 56.04 |
| Zm00001d010574_P001 | Maize | nucleus | 73.24 | 55.62 |
| TraesCS1A01G288500.3 | Wheat | nucleus | 71.13 | 55.49 |
| TraesCS1B01G297900.2 | Wheat | nucleus | 71.13 | 55.49 |
| Os05t0463800-02 | Rice | nucleus | 71.83 | 55.14 |
| Bra021147.1-P | Field mustard | nucleus | 60.56 | 54.78 |
| Bra006991.1-P | Field mustard | nucleus | 66.9 | 53.37 |
| GSMUA_Achr8P17450_001 | Banana | nucleus | 72.54 | 53.09 |
| TraesCS5B01G454900.1 | Wheat | cytoskeleton, cytosol, nucleus | 44.37 | 51.64 |
| Bra027199.1-P | Field mustard | nucleus | 60.56 | 50.59 |
| Bra023095.1-P | Field mustard | nucleus | 69.01 | 49.0 |
| Bra017209.1-P | Field mustard | nucleus | 64.79 | 48.17 |
| Bra017473.1-P | Field mustard | nucleus | 61.27 | 47.28 |
| Bra022147.1-P | Field mustard | nucleus | 60.56 | 46.24 |
| Bra000462.1-P | Field mustard | nucleus | 49.3 | 44.87 |
| Bra018585.1-P | Field mustard | nucleus | 41.55 | 44.7 |
| Bra001615.1-P | Field mustard | nucleus | 57.75 | 43.39 |
| Bra004428.1-P | Field mustard | nucleus | 47.18 | 43.23 |
| HORVU1Hr1G071620.5 | Barley | nucleus, plastid | 71.13 | 40.08 |
| Bra013143.1-P | Field mustard | nucleus | 54.23 | 36.84 |
| Bra037211.1-P | Field mustard | nucleus | 52.82 | 36.06 |
| Bra012301.1-P | Field mustard | nucleus | 44.37 | 31.5 |
| Bra017471.1-P | Field mustard | nucleus | 45.77 | 31.1 |
| Bra024924.1-P | Field mustard | nucleus | 47.18 | 29.0 |
| Bra031356.1-P | Field mustard | nucleus | 43.66 | 28.97 |
| Bra016397.1-P | Field mustard | cytosol | 37.32 | 27.6 |
| Bra005976.1-P | Field mustard | cytosol, nucleus, plastid | 26.06 | 24.18 |
| Bra009328.1-P | Field mustard | cytosol, nucleus, plastid | 27.46 | 23.49 |
| Bra035959.1-P | Field mustard | cytosol, nucleus, plastid | 27.46 | 23.21 |
| Bra028668.1-P | Field mustard | nucleus | 20.42 | 15.1 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.2 | EnsemblPlantsGene:Bra005074 | EnsemblPlants:Bra005074.1 | EnsemblPlants:Bra005074.1-P | InterPro:CBFA_NFYB_domain |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:M4CLI7 | PFAM:PF00808 |
| PRINTS:PR00615 | ScanProsite:PS00685 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF85 | SUPFAM:SSF47113 | InterPro:Transcrpt_fac_NFYB/HAP3_CS |
| UniParc:UPI00025475AE | SEG:seg | : | : | : | : |
Description
AT2G38880 (E=9e-061) ATNF-YB1, HAP3, ATHAP3, HAP3A, NF-YB1 | NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1); transcription factor
Coordinates
chrA05:-:3310690..3311717
Molecular Weight (calculated)
15313.8 Da
IEP (calculated)
4.690
GRAVY (calculated)
-0.686
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTPSSPAG DGGESGSGSV REQDRYLPIA NISRIMKKAL PPNGKIGKDA KDTVQECVSE FISFITSEAS DKCQKEKRKT VNGEDLLWAM ATLGFEDYLE
101: PLKVYLARYR EGDNKGSGKS GDGSNRDAAA GGVSNEDMPV WF
101: PLKVYLARYR EGDNKGSGKS GDGSNRDAAA GGVSNEDMPV WF
001: MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
101: LKIYLARYRE GDNKGSGKSG DGSNRDAGGG VSGEEMPSW
Arabidopsis Description
NF-YB1Nuclear factor Y, subunit B1 [Source:UniProtKB/TrEMBL;Acc:F4ITZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.